Array 1 88255-89625 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXCN01000005.1 Salmonella enterica subsp. enterica serovar Montevideo strain CFSAN005876 NODE_5_length_303866_cov_3.03872, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 88255 29 100.0 32 ............................. GAATGCCGGAGATTACCGGCTCCCCCCTGTCG 88316 29 100.0 33 ............................. ATTCGAGCCGATTTTGTCACGGGCCATGCCTGC 88378 29 100.0 32 ............................. TTGAAGACCGCGCTGATGCAATCCGCCAGGCG 88439 29 100.0 32 ............................. TCGGCATTGATCTTGTTCAGTTCAGCCGGTGA 88500 29 100.0 32 ............................. TGACCACAGGTTTTTCGTCTGCTGATGTCGGC 88561 29 100.0 32 ............................. GACAAGCTGGAACGTGATCGGCTTACTGATGA 88622 29 100.0 32 ............................. CGCCGTAAATTGTGGTACGTCGTGACTACAGA 88683 29 100.0 32 ............................. GCGACCTGCTCGACAGCATTCAGTTTGTTGTT 88744 29 100.0 32 ............................. GCAGCCGTGCGCAAGCGTGGCCTGACGATGAG 88805 29 100.0 32 ............................. TGCTGTTTGCAGACCACACAGGCGACAAATTC 88866 29 100.0 32 ............................. AGGGTGAACGAAGTCACTCTTAAATTTCTGAA 88927 29 100.0 32 ............................. TATGAATTTAATGTTTATCCTGGGCGCTATGA 88988 29 100.0 32 ............................. GTTAGGGAAGGTACTCCTGGCTAATTCTTTTG 89049 29 96.6 32 ............................A TTAGTATCAGTATAAATAACCACGTATTCACC 89110 29 100.0 32 ............................. TATGAGCCGATCTGGAACGTGAGCGCTGAAAC 89171 29 96.6 32 ....A........................ AGTTCGGCAGGTTTTAGTTCCGTCGCGTTTGC 89232 29 100.0 32 ............................. AAAATATAAAGTATGTTTTGTTTAATTCTAAA 89293 29 100.0 32 ............................. GCAAAACTCCCCAGATACCGCGCATCGGCACT 89354 29 100.0 32 ............................. ATAAATTATCGGGAAATCATAATCAGCGCCGC 89415 29 100.0 32 ............................. TCGAGTTCTGGCACGTCAGACTGACGTATCGC 89476 29 100.0 32 ............................. AAAACCCTCAAATATGCGTAACGGGAGGCTGG 89537 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 89598 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================= ================== 23 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCACGAAGTGCGCTGTACGCCTAACACCTGGGTAACGGTTTCACCAAAAGTGAATATGCGCGGGGGATATGACGTGCTTTCCCAGGCGCTGGAGCGCGCCAATGAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATGCATTACTAATTTTACGGACGGCCTGCCGATGCCGTCTGTGAGTCATCCATTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGAGCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 106388-108003 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXCN01000005.1 Salmonella enterica subsp. enterica serovar Montevideo strain CFSAN005876 NODE_5_length_303866_cov_3.03872, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 106388 29 100.0 32 ............................. GCAGCATTATATCCTGTCAATACTGGGTTATT 106449 29 100.0 32 ............................. CCCTGGTTAATGATGGTTGTCAGCTTAGCCAG 106510 29 100.0 32 ............................. GTGGCAGCTGAGAACCCGGAGGTTATCCGGTG 106571 29 100.0 32 ............................. GTGCCGTGTTTGAAATTCCCAACGATACGTTG 106632 29 100.0 32 ............................. GCGCGGCTCGCATGTCAAAAATTGTCGATACT 106693 29 100.0 32 ............................. TGGCAAACGAAAGGCCATGTTGGCATAAGTAG 106754 29 100.0 32 ............................. ACGTATTACGTTTATGTCCGCACCAAAAATGC 106815 29 100.0 32 ............................. AGACATCAATTACTCAGGACGGGATGATGTTT 106876 29 100.0 32 ............................. TATGCTGAATTACAGGAAGGCAGGAAGTACGC 106937 29 96.6 32 ............................T TACCTGGTTGAATTCGGTCTGACTCCGGCCGC 106998 29 100.0 32 ............................. GCGCCCGCGGCGATTTAGCATAATCTGCAGTT 107059 29 100.0 32 ............................. GAGGGGGTTTCTTCATCGTCTGATGAAAACGG 107120 29 100.0 32 ............................. TCGGATGCATTGGGAGCGGGATTGCCGGAGCC 107181 29 100.0 32 ............................. GCTTCCCAACCTACCTGGAGCCAGGCGCGTTC 107242 29 100.0 32 ............................. CGGGCGCGGTCGAGAAACCATGCCTGCTGATA 107303 29 100.0 32 ............................. CCATATACAGTGGCGAAATTCCTTTTCCTCTT 107364 29 100.0 32 ............................. CGCAGGCAACGCTTCCCATTCCTCCTGCGACA 107425 29 100.0 32 ............................. CAACAGCCGGGAAAATGAAGGCTGAAGGGCAA 107486 29 100.0 32 ............................. AATCTAATTATGACGGCAAGGCGACTACTAAA 107547 29 100.0 32 ............................. AATAATCACATCACCATCACGCGCGACAACAT 107608 29 100.0 32 ............................. CGGTCTCCAGATAATAGCCGATTTATTTAAAA 107669 29 100.0 32 ............................. GCCCGCATTAAGCCGCTGACGCACTGGATCAA 107730 29 100.0 32 ............................. GAGTTATTGTCACTCGTCAGTGATAATTTTCT 107791 29 100.0 32 ............................. CCCGTTGAAGATCTGGACGCATGGGGCAAAGC 107852 29 100.0 32 ............................. GTGAGCTCGGTTTTAATTTCGTCGCTAAGGTG 107913 29 100.0 32 ............................. CAAAAGGCCGACAGTGTGTACACCTCTAAAAA 107974 29 96.6 0 ............T................ | A [108001] ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGAAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAATTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGTTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGTGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //