Array 1 389369-388740 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134341.1 Streptococcus pseudoporcinus strain NCTC13786 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 389368 36 100.0 30 .................................... TTCGTCTTTCCATTGCAGGTACAATTTTTT 389302 36 100.0 30 .................................... CACACAAAAAACCGCCCAGAATTAACTGAG 389236 36 100.0 30 .................................... GACTTGCTTCATAACAGCGAGTTTAAACTG 389170 36 100.0 30 .................................... TAGTAAATCAGCTTGGTAAAAAGATAAATA 389104 36 94.4 30 A............C...................... AGCTGGCGCTCAATCGTGTATCGGCAGAAC 389038 36 97.2 30 .........................A.......... TGATAAAATCTCAATGTGGTTGGAGTATGA 388972 36 100.0 30 .................................... CTTACGTGCTGAGTTTACTCGTAGCAACCA 388906 36 100.0 29 .................................... TCTTTTTTCATGATATACTTAATGAGTAA 388841 36 100.0 30 .................................... TGGATCTGGAGTTGGATCTGGAACTGGAGT 388775 36 86.1 0 .............A...........A.......TGA | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 97.8 30 GTTTTAGAGCTATGTTATTTTGAATGATTCCAAAAC # Left flank : TGAAAAGCCAGAAGTGAAATCAATGGTTGATAAGTTAGCAGCAACTATCACAGAATTAATTGCCTTTGAATATCTGGAAAATGAACTTGACTTAGAATATGATGAGATTACTGTTCTTGAATTGATTAAAGCTTTAGGAGTTAAAGTTGAAACAAGGAGCGATACTATCTTTGAGAAATGCCTTGAAATTCTTCAAATTTTCAAATATCTAAATAAGAAAAAATTACTTATTTTTGTTAATTGCGGCTCTTACCTTAATCAAGAAGAGTAAAAACAATTATTTGAATATATTGACTTATCGCAAGAGTGTGTTTTATTTTTAGAACCCCGTCAATTATATGATTTTCCACAATATATTTTAGATGATGATTTTTTCCTTTTAGATTACAATATGGTATAATAGATGAGGAAGTAACTTTAAAAAATGAATTCTTCGAAGTTGAGGATTTGTATTGGATAAATAGTGTGAGTATGAATTTCGCGGAAAAATTTTCTGCGAG # Right flank : GGTGATTTAACGTTATCAGTGATAAAGGCTTGTTGATTTTTCTATGCAAACCCTTACATTTTTTGCTATAATGGTAAAAAATAAGAGGAGACTGTTAATGGAGAAGACATTTTTTATGATAAAGCCTGATGGTGTTCAACGGGGATTAATGGGGCAGATTTTAAGGCGCATTGAGAGACGAGGGTTTAGAATAGAGCAACTGCAGATGATAAGACCAAGTCGCGAGCTTTTGGATAGTCATTACCAGCATCTAAGAGGTAAAGTTTTTTACCCTTCTTTGCTTGATTACATGATGAGCGGTCCTCTTTTAATCGGAATACTTTCAGGTAGTGATGTTATTGCGTCTTGGCGTACTATGATGGGAGAAACCAATCCCAAAGATGCCTTGCCAGGGACCATTCGTGGAGATTTTGCTCAGGCGCCGGAAGCTAATGCTCCGATGATGAATTGTGTTCATGGTTCTGATTCACTAGATTCTGCTCGGCGTGAAATAGAACTTT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGATTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 781748-780920 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134341.1 Streptococcus pseudoporcinus strain NCTC13786 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 781747 33 97.0 33 ................................T TTACCGACCTGATATGCTACCAAATTTCCAAAT 781681 33 100.0 32 ................................. GAAGATTTAGATGATTGTTCCACTTCATCATC 781616 33 97.0 33 ................................A AAAGCAATCAGAGAAAAATACAACAATAAAAAT 781550 33 100.0 32 ................................. CATCATGTCTTTTGATATAATCAAGCACTCTT 781485 33 97.0 33 ................................T GTATAAATATTTTTGTCAGACTTTTTGTAAGTT 781419 33 100.0 34 ................................. AAAAACATTGCAAGCAACAACACCAAGCGGTGGA 781352 33 100.0 34 ................................. CTGAGACAGAGTTAAGCAAAGCTTTATGAATCAT 781285 33 100.0 33 ................................. CAAATCGAGCAGAGGACGAACGCTTTAACTTGC 781219 33 97.0 34 ................................A CGTCTAATAAAGCAAAAGATCAAGAACGTATTGA 781152 33 97.0 33 ................................T CATTTTGTAATTTAACATGTAGAGTAGTCAAAC 781086 33 97.0 33 ................................T GATTTTCCGTATCCTTCAAACGATACATCATTT 781020 33 93.9 33 ...................T............A TAGTATCTTCATCATTAGTCCCAAGATAAAGAA 780954 33 81.8 0 ...................TT....A.A.T..G | T,T [780929,780938] ========== ====== ====== ====== ================================= ================================== ================== 13 33 96.7 33 GTCGCACCCCTCACGGGTGCGTGGATTGAAATC # Left flank : CGAAATCTATTAGGGGAGAATTAGATTCTTACCCACCATTTCTAATTTAGGTGATTGTTATGATGGTTTTAATTACTTATGATGTTAATACGGAGACCCCAGCAGGACGTAAACGATTGCGACATGTTGCTAAATTATGTGTAGACTATGGACAACGGGTTCAAAATTCTGTTTTTGAGTGTTCAGTGAGCCCAGCAGATTTTGTAGAAATTAAAGATAAATTAACTAAAATAATTGATATGGAGTCTGATAGTGTTCGATTTTATCGTTTAGGTAAACATTGGCAAAAGAGAGTTGAAATTCTTGGCCGTGATGTTTCCTATGATCCTGATATGGGACTTTTACTTCTTTAAAAATCTTTTCGCGAACCGGGGTTACACATTAAATCCTGCGAGATTCGCGCATGAAATGATAACCATTAAGTAAAATTGAGATAACTTTACGAGTAAAAGAGATATCGTAAAAATTTAATTTTACTTTAAATAGTGTTTTTATGTGCT # Right flank : ATAGATATATATAGAAGTTTAATCATTTTATACAAATATGAGAGAAATTTTAAATTGTTCAGCTAATGACACCGTTTACATATGCTCCTCATCTTGCTATAATCATTTCATAATTAAAAAGCATGGTAACATGCTTTTTTATGTGAGGGTGTACTTGGGTATGGTAAATATGGAAAGAGAAGTTGGTCTTACCTTTAGGGAGAAATTGCGGCTTGAGGTTTTTGCTGGTTTTAAGAAAACAGCTTTGGTTATTGGTTTGAGTTATGTGGTGGTGCTGACCTTGTTTATTGTTTCGGTTCAGTATAGTCAATTGGCTGGCGGGACAAATGATATTGTCTCATATTTCAATACAGTCCACTGGAAGAGCGACCGGCTTTTTGCCAAACTTGAAGAAAAGGGTCTAAACCAATTCTTGTCAGGGCACCTGAGTGAGCGTGAGATGTTCAGAAAAGTCTATCAAGAGTCGACTCGTCTACCGTTTCGCTCGGCTATTTCCATCT # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.62, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCACGGGTGCGTGGATTGAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.60,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //