Array 1 301131-301356 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABDHW010000001.1 Akkermansia muciniphila strain CSUN-17 AmII assembly_contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ================================== ================== 301131 31 100.0 33 ............................... TGGTAGGGCTCTAGGCCAAATCGGACATAGGTA 301195 31 100.0 33 ............................... TTGCCGGGCGGGGCCATCTTGTAATTCGCCAGG 301259 31 100.0 34 ............................... CCGGGAGCCAAGACAAAGCGGCTTGTCCATGTCA 301324 31 87.1 0 ....T................A..A.....G | G,T [301337,301354] ========== ====== ====== ====== =============================== ================================== ================== 4 31 96.8 34 GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Left flank : GCCCTGTAAGGAATATTCCGTCATTCATTCGTTAACGGGAGCCGTCCGCAAGGGCGGCTCCTTTTTAATGGCAGCGGAAACCGGAGGGGAATTCGGCTTCCGGCAATGGGGAAAACGGCGCGCCGCCCGGGAGGCCTGTTGTTTATGTGTCTCCATGTTGGCGGCTCCGGGGATGCACGGTTCTGTTTGAAGGAACGTGGAAGATGTTGCTGGACGCGGCAGAGGGGAACGGCTAGCATCAATGAACCAAGTTGAATGCAAGCCGGACCGGACGCGGCGAAGATGGAATATTACGGAATAACGCCGCGTCTGATGCCGCCTTGCGCCAACCCCAAGCTCACAGAAAATTCCCGGGAGACCGGCGCTTGCTGCAAGTGATTGGGAAATGGATATTGACAAAAGAATCACCTCTTATCGGGCCTGACCGTATCCGGCTTCCGCATCAGGTTGGCGCAAACCCCTTGCTGCGCCCTTGATGCTCAACCCGTATCCTCCAGGCC # Right flank : GTGCAGTTGTTTTTAATGATGTCTGCATGGTAAGGGAGGTGATTATTTTGATAAATGGTTATTTATTGAATATTCTTTTAAGGAGGATTTTTATGTTGGGGAGGACGCCGGATGAACAACTTTCCGGATGGTTTATTATGGTTTCCGGACAGCCTGTCCGGAAAAGGGAAGCAGGCAAGCGGTGCATTTCCTGCGGCATGGGATTTTTTTCCGCGTTCACAGTTTGTGATGGATGAAGCCGGAGCAATCCAATATAAAGATAAGATGCATATAGACTGGTTGAATGATTTTTTGGAATGGACGCCTATTTTGCTGATGGTGCTGGTAGCGGTCGTTTTTCTGGTGGCGCTGAAATGGAGAAGCGGCAGGATGAAGAAGTTTCTGGAGGAGTGGAAACGTAAGATCGTCCGGCAGGCGGAAGCCGGGAATTCCTCCGCCCAGTTCCGTCTGGGGCGCATTTACCAGGAGGGGGACGGCGTGGAGAAGGACCCGGACCGGGC # Questionable array : NO Score: 8.70 # Score Detail : 1:0, 2:3, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.30,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,1.01 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 179001-180458 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABDHW010000004.1 Akkermansia muciniphila strain CSUN-17 AmII assembly_contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 179001 31 100.0 34 ............................... CAGCACTTCCGCCAGGGCCTCCTTGACGTCCTGG 179066 31 100.0 34 ............................... GATGGACATGCCGATCTTTTCCTCGATTTCGTTT 179131 31 100.0 33 ............................... GCCATGTCCTCCTTACTCTCGATTTTGACGCGG 179195 31 100.0 34 ............................... TTCCCCCTCCGTGTACCGTGGAGGAAGTCGAAGC 179260 31 100.0 35 ............................... CCTTGTCGTCCATCAGGTACCGGGCATGGGCGACG 179326 31 100.0 34 ............................... TTTGCCGGTCGTGCCAAAAAGCTTGTCGTCCGCG 179391 31 100.0 34 ............................... CGACGTAGGAAACCAACCCCGGATAGCAAATGAA 179456 31 100.0 34 ............................... TTTGGCGGTGATGGCCTGTTTGGCTGGCGCGTTG 179521 31 100.0 32 ............................... CCGTCTTGATTTACGCTCTTAATGGTGTTAAT 179584 31 100.0 34 ............................... TGAATTTCCGTCAGGGCTTGCTTGAATTCGGCGG 179649 31 100.0 35 ............................... AGATAAATAACCCTCACAACAAAATAGCTTGCAGT 179715 31 100.0 33 ............................... GGTGGACCTGTCCCAGTTCGGAGCAACGTTGCC 179779 31 100.0 34 ............................... CGCCATTTGCTGCACGATAGGCAGCCCCAGCCCG 179844 31 100.0 33 ............................... CGACGCCTGGATGGTCGCCAACGAAGTGATCGA 179908 31 100.0 34 ............................... CCACTTCTAGACGAACTTTAATGCCTAAAAATAG 179973 31 100.0 35 ............................... TATATACAATAAGACCGGGAACATCTTTGCTAATA 180039 31 100.0 34 ............................... TCCGATCAGATCCCCTAAAATTTCTTCCGCAATT 180104 31 100.0 34 ............................... CGGGTATTGAGGCACGGGAATTCCCGGAAACTGA 180169 31 100.0 34 ............................... ATGTTTTAGTGATTGTTGAGTAAGTTGTTTTTCA 180234 31 100.0 34 ............................... CAGAATGAGCAGGAAACATCCGATTTTGCGGAGA 180299 31 100.0 33 ............................... CGGGAAGGTACGAACGGCCCTAAAGAAGAAGGA 180363 31 100.0 34 ............................... TCGCTGGGTTTCAGCGGAGCGTGTTCGTCCTGCG 180428 31 90.3 0 .....................TA.......G | ========== ====== ====== ====== =============================== =================================== ================== 23 31 99.6 34 GTCGCACTCTCACGAGTGCGTGGATTGAAAC # Left flank : GCCGTGAAAATACCGTTGCTGGCCTGCCTGGCCTCCGCCGTCTCCCTGGCGCTGGTATGGCTGTTGAGCCTGAACAGGTGGACGCGCAAAAGCATTATGTAAACCGCGGATATTTTCCGCAGGGCGCTTCGGGACCACGGCAGTCCCGGGGCGCCTTTTCTTTTGTGGAAAAGAGAATAAGGCGGTTTCCGGGGAGGGGCCTGCAAAATTCTGGACGGGAAAGAGGGAACAGGCTAGGATATTCCTGCATCGTGCACAGGCCCTGGTTGCCGGAGATGTGGGCTTTTTAACGCATGAAAAGCGCGTCTCCCGGTCTCCCTTCCGCCAACCCCAAGCTCACAGAAAATTCCCGGGACACCGGCGATTTACGTAATCCGTTGGGGTTCTAATCTTGACAACTATCATCTCTTTTTTACGGCCTGGAATATGTGTGCCTCCATGGGAGGTTGGCGCAAAACACCCGTTGCGCTGTTGATACTCAAGCCATAGGCGTCCAGGCC # Right flank : GTCCACATGTCTGCGCGGGGCGCAAGCCTCTCATGCACTGCTTCTTGAAAGAGGTGCAGACCAAAGCTTTATTTTCCGCAACCGTATCGTTTGGTGTTTGGTCTGTTCCCCTGTTATTTTAAGAAAGGACGGTAAGAATCCGTAGTGGAACGGGATGACGGCTCCCTTCCGTTTACCTCTCAGATTGGCATGGTTTGCAGCCTTTTAATGTCCGTCCGCGGCGGGTTGCCGAACATGCGCTTGTATTCCCGGTTGAATTGGGTAGGGCTTTCGTACCCAACGCGGAAGGAGGCGTTTCCTGCGTCCATGTTTTCCACAAGCATCAGGCGGCGGGCCTCATTGAGGCGGATGCGTTTCTGGAATTGAAGCGGGCTGATGGCCGTGAGGGTACGGAAGTGCTGGTGGAAGCTGGACGGGCTCATGCCGGCGCGGCTTGCCAGTTCCCCGATGCTCAACGGCTGGTCGAAGTGCTTTTTTATCCAGTCAATGGCTTTTGCTAT # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTCACGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.60,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 39754-39321 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABDHW010000007.1 Akkermansia muciniphila strain CSUN-17 AmII assembly_contig_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 39753 33 100.0 34 ................................. CAAGTCTACCGTCTGCAATTCGCACCAACATAGA 39686 33 100.0 33 ................................. GGGTCGGTGTAGGCAAAGGTGGTATTGCGGTCG 39620 33 100.0 34 ................................. CACGAGTACGCTGACCCGCCCATGCCATCCGATT 39553 33 100.0 34 ................................. AACAGGATCACCGCCCCCATTATGAAGCAAATAA 39486 33 100.0 33 ................................. TCCTGATGTGGCAAAAAAAGTCCTGGAGTCTGT 39420 33 100.0 34 ................................. GCGGGCCACCACTACGCACAAGCCGCCGTCATCA 39353 33 97.0 0 .................A............... | ========== ====== ====== ====== ================================= ================================== ================== 7 33 99.6 34 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : CTTAGCCATGTATATTCTCATTACTTATGATGTAGCTACGGATGACAAGGTCGGGCAGCGGCGGTTGCGTCAAGTTACCCGCGCCTGTGAAAATATCGGTCAGAGAGTGCAGAATTCCGTGTTTGAATGTGAGCTGGCTCCGGCCCAATTGGTTGACATCAGGAACAAGCTGCTTAAGATTATTGATAACGAGAGCGACAGCCTGAGAATTTATCACATGGGGTCCAATTGGCATCATAAAATAGAGCAATTGGGCAAGGAGAAGAGTTTCGACATTTCCGGCCCTTTGATCATTTAAAAGCTGTCTGAGCACGGCCTTTGCGCCAACCCCAAGCTCACACCAATTTCCCGGGAGATCGGCGATTGGCGTAATACATTGGGAATGGAAGATTGACAGATGAATACTTAGAAGAGAAGGCTAGGTGATGATGGCCTTCTTCGGGAGGTTGGCGCAAAGTATCGTTTGCGCTGTTGAATAACAATGTATATGGTCAGGCGCA # Right flank : ATCGGAAAGGCTTGCTATGTCCGGATTTGCGTAACTCTTCCTAAAAATGAAAAGCTCTCCAGGCTTGTTTGGTCTGGAGAGCTTTTTTTCGGGTTTCGTTGTTTATTTTTCAGCCGGGGGCTGCCGGTTCAGATCGAGTTCTGCGGGAGGGAGGGACTGGAGCAGGGTCAGAATGGGGTCCTGCGGTGCGGCGCCCGCTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGGAGGGCCGCCAGTTTGGTATCTTCCACCAGCGCCTTGAATTTGTCCGCCTGGGAGTATTCTCCATCCGTATCCCGGAAGACGCGGGCCAGCCAGCGGCGTTTTTCTTCCGTGCTGAGCAGGGGCTCTTTCATGGGCTGGGGAGGGTGTTTTTATCCAGCAGGTTTCCTGCAAGCTGTTCCCCATCCGCGGTGGGGCGGTAGACGTAAGGGCGGCTGTCCCCGAAGCGGTTGATGTATCCCTGTGCAATGAGGTCCTGCAGGATGTT # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.15 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 83306-82818 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABDHW010000007.1 Akkermansia muciniphila strain CSUN-17 AmII assembly_contig_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ================================== ================== 83305 31 100.0 34 ............................... GTTATTGCCGGAACCGCCGCCATACCAAACCCGG 83240 31 100.0 34 ............................... CGAGCACTGCAATAAGCTCTTCATCGTGTTGGAT 83175 31 100.0 34 ............................... CAGGTCGAGCATGTTGCCTGTCTGGACGCTTTCG 83110 31 100.0 34 ............................... CAACCTTGAACATCAGACCCAAAAATAATATGCC 83045 31 100.0 34 ............................... CAACCTTGAACATCAGACCCAAAAATAATATGCC 82980 31 100.0 34 ............................... CGGGCTGGTGGCCTTGTCCAGCAGTGCCTGGGCA 82915 31 96.8 34 ...............A............... AACGGATGCTGATCATTGCTCCCCCGCTGGCTCA 82850 31 83.9 0 ........C....G........G....C..G | C,G [82820,82824] ========== ====== ====== ====== =============================== ================================== ================== 8 31 97.6 34 GTCGCACCTTCACAGGTGCGTGAATTGAAAC # Left flank : CTCGGAGAAAACGATGCCTCCCTCAAGGACACGGTAACTATTCGCCACCGCGACTCCATGGAACAGGAACGCGTCGCCATCAAGGACTTGCTGCACTGGCTCATTGCCCGTGTGCGTTAACGGCGCCTTTGGCGGCTGCTGATGCCGCAAAACACTTCAAGGCCGCTCCATATTGAATGGAGCGGCTTTTTGTTTTCGGAATGGCAGAGAAGGAAAAAGTTGCTGGACGATAGGCCGCTGACCATCTAGCATTAAAAACAGGTTGGTGAACCAGATGGGAATCAGCAATTCCAAAATGAATGCTGAACCGCTGATCTGTTTGCGCCAACCCCAAGCTCACAGGAATTCCCCGGTAGATCGGCGATTCCTGTAAGTCCTTGAAATCAGCAGATTGACATTCCCTCCAATAAAATATAAGGCGTAAGGAATATGCATCCTGAAAGAGGTTGGCGCAAAAAGCGATTTGTACCACTAACTTTCAACGCATATCCCCTTCCGCC # Right flank : GGACACGTTTTGGAAGGTTGTGTAACGCGCCAAGGCATCTGATAGAACTATGACAGGTATCTGATATAACTTGCCTGTCTGCCTACTCCGCGCAGGGTGTCTGCATAGACTCTGCCTCACCCTTACACGCGGCCAGAAGCTCACCCCAATCCACCGCCTCATCGTCCTCCCTGTCCACTCCCTCCCGGAGCATCCGCTCCCTGGCGTCGGCCAGCAGGTGCATCACTCTGGCCCGCTCGCTGGATGGCCGGTCATCCATGCGAGGGGAACCGGTGGTCACCATCGCAAACCTGGCCGCATAGCTCTCGGCTCTCACCGTCCTGCTAGGCCAGCACCAGGCCGTCCACTCGCTCCAAGGAGATCGTTGTCGCCACGGCTCCTCAACCCGGCACAATGTCACCGGCACTCTGGCCAGTACCTCGCGGCCGATCGTCACGTCCTCCGGCGCTGAATCGTCCAGGAGCGTCCAGTCCATCTCCCGGTAGAGACGTCTGGCCATC # Questionable array : NO Score: 9.14 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTCACAGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-4.00,-4.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //