Array 1 289-60 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNBV01000111.1 Pseudoalteromonas phenolica strain S4048 S4048_S40_L001_R1_001__paired__contig_117, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 288 31 93.5 35 .G.........................T... ATACATTATGATAAAACAGGTTGTCACATTCGCAG 222 31 100.0 35 ............................... CAGAGAAGTTTACGCAATTCTATTTGCTCCACTGC 156 31 100.0 35 ............................... CTTGAGTTGGGTACCCGACACAACACCAGCCTCTT 90 31 83.9 0 C..C....G............G....A.... | ========== ====== ====== ====== =============================== =================================== ================== 4 31 94.3 35 GTCGCGCCTCCCGCAGGCGCGTGGATTGAAA # Left flank : GCATATTTATTGTCTGC # Right flank : ACCTGGACGTTAGCTTGCCGCAGAACGCCTAACTCGGGCGCGCCGCCCGCAGGCGCGTGG # Questionable array : NO Score: 8.57 # Score Detail : 1:0, 2:3, 3:3, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCTCCCGCAGGCGCGTGGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [26.7-20.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 1 231-2 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNBV01000114.1 Pseudoalteromonas phenolica strain S4048 S4048_S40_L001_R1_001__paired__contig_121, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 230 32 93.8 33 .G...................G.......... TCTTACACTGGAGTCATAATTTCTAATTTATGT 165 32 100.0 29 ................................ AAGGCCCATGTAATAACGGAAAATATCAA 104 32 100.0 39 ................................ TTGATAAAACCTCGTCGCGACTTCCAAGTCACTATCAAC 33 32 96.9 0 ..................T............. | ========== ====== ====== ====== ================================ ======================================= ================== 4 32 97.7 34 GTCGCGCCTCCCGCAGGCGCGTGGATTGAAAC # Left flank : CGGCGGTGGCACCCTCATGCGTCCCTTTAGC # Right flank : CA # Questionable array : NO Score: 8.75 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCTCCCGCAGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.77 Confidence: HIGH] # Array family : NA // Array 1 54-422 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNBV01000115.1 Pseudoalteromonas phenolica strain S4048 S4048_S40_L001_R1_001__paired__contig_122, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ======================================== ================== 54 31 96.8 37 .....................A......... CATAAGAACATAGAAAACGTCGAAAAAGCATAAAACA 122 31 87.1 14 T....................G.C...A... TGTCGCGCCTCCCG Deletion [167] 154 31 93.5 33 ..................C..........C. CACCACTATCAATGAGTTTATAAGCCTGAAGTG 219 31 96.8 35 .........................G..... CAAAATCGATGATTACAGATGAATTGGTAGGATAA 285 31 80.6 5 .....C....A.T..C.........A....T TAGCG Deletion [321] 321 31 93.5 40 .......A..................A.... CTCTTACACTTGAGTGATACGCCTATTAATAAAATACTTT 392 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ======================================== ================== 7 31 92.6 28 GTCGCGCCTCCCGCAGGCGCGTGGATTGAAA # Left flank : TTAGCGGAAAACAATGAATTGTGTTAGTTTGCTTGCGCCTTTGTAAAAAGGCAG # Right flank : CAACTAATGAGGGTAATTTCATTTATCTTGATAAGGTCGCGCCTCCCGCA # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:3, 4:0.63, 5:-1.5, 6:0.25, 7:-0.73, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCTCCCGCAGGCGCGTGGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [5-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 245196-247984 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNBV01000011.1 Pseudoalteromonas phenolica strain S4048 S4048_S40_L001_R1_001__paired__contig_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 245196 32 100.0 34 ................................ TTGTACGTTAGATTGCGTCTGAAAGCCTAATTCG 245262 32 100.0 34 ................................ ATTCATTCTTGTTGCAATGCCTTGCCTGGTTAAA 245328 32 100.0 34 ................................ AAGTGCCTTTGTATCAAGGTGCAGCAGAGACAAA 245394 32 100.0 34 ................................ TGCTAAAAATGCCAATTCTGAATTTGCGTGACGA 245460 32 100.0 34 ................................ CATGTTGCTGATACTCCTATTAATTACCTACATT 245526 32 100.0 34 ................................ AACTAATGAGGGTAATTTCATTGAGCTTGCGAAG 245592 32 100.0 34 ................................ TGAATGCGGCTGAAGAAAGCCCATTCCCAACGGG 245658 32 100.0 33 ................................ TACAAGTTCACTTTGCGTGAGCATCAACCATAT 245723 32 100.0 34 ................................ TTCCTCGACGGTTATATCCACTCGCGGCGCAACC 245789 32 100.0 33 ................................ GGTGAGTTGGTTTGTTAGGATGATGCAGCTTGC 245854 32 100.0 33 ................................ TATTTTTCCCGCGCCTTTTTGACTAGCTTCAAG 245919 32 100.0 33 ................................ AAAACCAGTTTAAAACTAAATTAGTTTTAACTT 245984 32 100.0 34 ................................ ATGCGCTGTTGCACACTCATGCTGCCTTTTAGCG 246050 32 100.0 34 ................................ TCTTACACTTGAGTCATATTTTATAAATAATGAT 246116 32 100.0 34 ................................ AAGGCCCATGTAATAACGGGTTTGAAAATATCAA 246182 32 100.0 34 ................................ ATTATAAAATTGAAACGTCATAATCCATTTCAAC 246248 32 100.0 34 ................................ CTGTAAATCTAAGCTTTCTATTTGCTACATTATT 246314 32 100.0 33 ................................ TAGAGTTGGGTGATTGGAATTAACCTCTACACC 246379 32 100.0 33 ................................ AGTAAAGCGCGGCTCGAAGCCATACTCTCTACT 246444 32 100.0 35 ................................ TAAACCACTCAAACTGCTCAGAGTTATTGGCTGGC 246511 32 100.0 34 ................................ AACATCATGATAAAACAGGGTGTCACCTTCCCAG 246577 32 100.0 34 ................................ AGAGAAGTTTACGCAATTCTATTTGCACCACTGC 246643 32 100.0 34 ................................ TTTAACTCCACAACCGAAACAACACCTTCATCTT 246709 32 100.0 33 ................................ TCGTAAAAACTCGTCACGACTTCCAAGAACTTC 246774 32 100.0 35 ................................ TTGCGTTAATTGCTCTTTGGAACTCGTTACCAAAT 246841 32 100.0 30 ................................ CTTTTTAGGCTTGCGGCCTCTTGTTTCTGG 246903 32 100.0 32 ................................ AAACGCACGGAACTTGTCACAACGCCCTCAAA 246967 32 100.0 35 ................................ CAGTCTATGCGCTCGTCATAGCTGTAGTATTCAAT 247034 32 100.0 33 ................................ AAAATTTTCTTGGGTTCACTGGAAGAGCACCGC 247099 32 100.0 34 ................................ CGAGAATGCAGATGGTACCGAGCTAGCTGCAATA 247165 32 100.0 34 ................................ TAAAAGACGGCTATTTCAAGCAACAACTCTTAAT 247231 32 100.0 33 ................................ CCGTTCTTGAATTAAGCATTAAGCAAATAAGCT 247296 32 100.0 34 ................................ TATTAATATGACTTGGCGCTTAATCCGTGATTTT 247362 32 100.0 33 ................................ ATCTTTATCTCCTAGTTAAGTTTTATTTAATGT 247427 32 100.0 34 ................................ GAGTGCTCGTGATTGGAACCCATGCAACCCAATT 247493 32 100.0 33 ................................ TAATAATTAAAATAAATTGTTTATGCGAATTAG 247558 32 100.0 34 ................................ AATTTCTGTTGTTTGCAGCTGCTTCAATTTATAA 247624 32 100.0 34 ................................ CCGTTTGCACTACACCAAAAATGCTAAATCAGGT 247690 32 100.0 33 ................................ AACACTATCAATGTCTTTATAAGACTTAACTGT 247755 32 100.0 34 ................................ TAAATCGAAGATTTCAGATGAATTGTTATGCTTT 247821 32 96.9 34 ..........A..................... TCGGTAAACTTGACCATCTAAGATGATCTTGTAG 247887 32 96.9 34 ........C....................... CGATGCAGGGTAGCGCAAACAGTATTGTTTTGTG 247953 32 84.4 0 ....T.....A.................CT.T | ========== ====== ====== ====== ================================ =================================== ================== 43 32 99.5 34 GTCGCGCCTCCCGCAGGCGCGTGGATTGAAAC # Left flank : TTTGTGATTAAAAAATAAGGAAGATGAACCATGATGGTATTAGTCACTTACGATGTCTCGTTTACCAGTGAAGATGGGCAAAAGCGCCTTAGGCAATTAGCAAAAGTATGTTTAGATTATGGTGTCCGCGTACAATACTCGGTATTTGAGTGTGAAATAGATGCAACTCAATGGCTTATTTTTAAAGATAAGCTTTTATCTATCTATGACCCTGAAGTAGATAGCCTACGTTTTTATAAACTCGGCAAAAATTGGCATAACAAAGTTGAACATCATGGTGCGAAAGTCGCCTTAGATATATTCAGAGATACCCTTATTTTATAATCGCTAGGCCACAGTTCTCAGAAAAATGCTGAGGATCTAGCGATGTTTTAAGTTCTTTAAAAATATGAAAATAATTCTGTTTTTTATGATAGTCACAAATCATTGAATGGGTTTTGCTTATCGTTAGCGGAAAACAATGAATTGTGTTAGTTTGCTTGCGCCTTTGTAAAAAGGCA # Right flank : TCATTTTATTTTTTACATAAAACATCATTTTTAAAAATATGTTTAAGTAAAAACTCTTTAAGTGCCAGATTTTGGGTCGTAGGCGCATCAAATACAACAATCAAGTTGTTTGGCTCTCTTTGGATTAGTGTGTGTACCGCGATGGGGATACGTTCACTTTGAGGCGAGCAAATAAACAAAGGTTGTGTTTTGAGGCGTTCAAGTTCGGAGGTGTGCCAATTTGTTGACCAAGGCACTAAAGCCCCCGATAGTGACAGTGAACGTATAGGCCAATGGGTATCGGGTGATTCTAAGTAAGTCTCTTTTAACGGCTTTATACGCCAATGTCGGTGGATATCATCTATGTCGACCACGTGGGGGAATGCGTAATGTAGCAAGGTGAATTGATTAACTTCACCCGGTTCAATAATTGGAAAGCAAACTTCTCTATTTGATATTCGCGCAACCAAAAGAAGTTGTGCGTCATTTGAAAGTTCGCACAGTAGTTGATTTGATGGTTC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCTCCCGCAGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA //