Array 1 42569-41879 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAIQG010000028.1 Anaerostipes hadrus strain MSK.14.29 NODE_28_length_51274_cov_203.457, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 42568 32 100.0 34 ................................ TTGCCGGGATGATGCTGGATATTTTTATGTAACC 42502 32 100.0 34 ................................ CAGATACCGGTGTTGTTCCTGTGATCGTTTTTCC 42436 32 100.0 34 ................................ ATCTGAGTTGTCACTTCTGCTGTATTTCCAGTAA 42370 32 100.0 34 ................................ GTTTGTATATGTGTGTAAATAATCATGTGTAAAT 42304 32 100.0 34 ................................ AATACCTGCTCGTCTCACGATTATAGAATCACTG 42238 32 100.0 33 ................................ TGAATATCATAATGCTTAAGATATTCCTTTAAT 42173 32 100.0 34 ................................ ATGTTACTATAATAGCACTTTGAATTGTATGTGA 42107 32 100.0 34 ................................ CGACAACGGATTGAAGATCATTATGATGATCTTT 42041 32 100.0 33 ................................ TACACAACAGTATTAAATAAATTTCCAAACTCT 41976 32 100.0 34 ................................ AATTTTAAGACATAATCCGACCAATTCCCTACTT 41910 32 71.9 0 ....A........CAA..A..CA....C..T. | ========== ====== ====== ====== ================================ ================================== ================== 11 32 97.4 34 GTCGCTCCCTTCGTGGGAGTGTGGATTGAAAT # Left flank : ATCCAGCATTTTTGTGGAAATGAGGTGATAAAATCAAATGTTAGTATTAATTACCTATGATGTAAATACAGAAACAGCAGCAGGGAAAAAGAGACTGAGAAAAGTGGCAAAGCAATGTGAAAATTATGGAAGGCGAGTACAAAATTCTGTATTTGAATGCATTGTTGATAATGCACAGTGTGTGATGCTAAAAGCACTCTTAAATGATATCATAGATGAAAATGTGGATAGCTTGCGTTTATATTATTTAGGGAATAAATATCAGACTAAAGTAGAACATTTTGGTGTAGATAGAGGAATACAAGTTGATCAACCATTGATTTTATAGTGATGCGAGGATATAGCAAACATAAAAAGAGTGGGAGATTCGCACTTAAAATATGAAGTAAAAAATAAATTTGTATCTAAAAATAAATAGTATTTGAATGATTTGTAGATATAAGATAAAATTTATTAGTGATATTGAACAAAAAATTAGAAAATTATTGGTTAATATTGCT # Right flank : ATATTTTACTTGGTGTGGGTTATATTAATATTTATAAATTGTCATCAATATTGTAGTAACGATAAGCGGATATACATACAATGGAAGCACAAGAAAGGAAGAAATCAATGAAACGATGTAAAATTACCGCAGTACGGAAAACAGAATATAAAGATCTAATGGAAAAGTATGAAAATCCAATCCAGCATGCCTGCGATATAGAAGAAGGACAAGTATTTATCACAGAAGGATGGAAACGACCAGAAGGATTTTGTGAAAGTGCATGGGAGAGTATTTCACCATTTGTTATGACATTAGCATATGGAGGCAGTGATATTTATGAAGGCTGGATGAAAAACAAAAACTCAGCGATGATCAGTTGCAATGACGGGTTTAGACCGGTAAGTTTTTACATTGAAGTGTTAGACGATAAAATATATTGATGAGGAAATATGACAGCGCTGGTTTATTCGGAACATCCATATTACGACAGGAAAGAGATCAGCATTGAAGATCTAAAA # Questionable array : NO Score: 9.13 # Score Detail : 1:0, 2:3, 3:3, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTTCGTGGGAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 37355-39077 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAIQG010000036.1 Anaerostipes hadrus strain MSK.14.29 NODE_36_length_39214_cov_137.312, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 37355 30 100.0 36 .............................. TTATCAGAAAAAAAGTGGCGAAAATGGAGTGTATTT 37421 30 100.0 35 .............................. AATGATTCCATTATCTGTCGACCAATATCACTCGT 37486 30 100.0 35 .............................. GGAGATTTTTGCAGGACATTAGCTTGGTCGATTTT 37551 30 100.0 36 .............................. TCTTTCAAAATAAACTTTAGGCTGTAAAAAGTAACC 37617 30 100.0 36 .............................. GTTTACACCATACAGACCGATTAGAAGAATCAGTCT 37683 30 100.0 36 .............................. GTTTACACCATACAGACCGATTAGAAGAATCAGTCT 37749 30 100.0 35 .............................. TGTAACACCTTCCGCTACAGAACCACCGTTACTGT 37814 30 100.0 36 .............................. CAGGCACATAATAACCATGATCATCTGCCCAGGCTC 37880 30 100.0 36 .............................. TTACAAAACAGTTTTATAAAAATTTATATGAAAGAA 37946 30 100.0 35 .............................. AGCTCATATTTAGTGTTGTTTGTCCCTTGATTTTG 38011 30 100.0 36 .............................. GGAACATCAACTACATATACGTCTGCATCATCACAC 38077 30 100.0 35 .............................. ATAAATGGTATTAATCTCATTACAGCTTTTCATTT 38142 30 100.0 35 .............................. TGAGGATTCTTACTATAACGAAGTTGGATTACCTC 38207 30 100.0 35 .............................. AATGCTCCAATAAGGAATAAGATAAGATATTTACA 38272 30 100.0 35 .............................. TACACTCCAACATCAGCACAAAAATTCAAAGACAA 38337 30 100.0 36 .............................. GGATGGAGAACAGTTGGCAGAAGTTCCAGGAATTAT 38403 30 100.0 34 .............................. ATGTACCATATTTCGAAGAACTTGTAGAACATAT 38467 30 100.0 34 .............................. ATCTTCGTCAGGTCAGGAATAATGTCTTTATCAG 38531 30 100.0 35 .............................. AGATAAACCAGCGTTTGAAAACAATACTCCTATCT 38596 30 100.0 36 .............................. AACACCATTCGTCATTGCACTACGCAATAATTCATA 38662 30 100.0 34 .............................. AATAACCATCTTCAATTGTTAGTGGAATAGCGTT 38726 30 100.0 35 .............................. TCAGATGTCATGTACTGTTCTGGGCATTGAATAGT 38791 30 100.0 34 .............................. TGATATGGTTGTATACTTTCATTACAACTTCTTC 38855 30 100.0 35 .............................. AAAGAGTTCAAAGATGCAGTTAAGAAAGTAATTAT 38920 30 100.0 35 .............................. TCAAAAATCAAACAGGACACACTTTTGAGTCTGTG 38985 30 100.0 33 .............................. CAGAAACGTGGCAATCTACAGAAAGGTGGTGGA 39048 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 27 30 100.0 35 ATTTCAAAACATCTCATGTTATTGTTTAAC # Left flank : ATTGATTCAATAATTTTCTTTAATTCATTTTCCCTCTTCTCTGTTAATTCCAAAATTACTACTTTTTTATTAGATTTGTTTTTTTCAACAAATTCTAGTTTCCCTTTTCGATAAATTCCTTTATTTTTTAAAACACTTAGGTAATATAATAATTGCCATTTTGCTGCTTCTACATCAGCATCTGATTTTTTTACCTCTGTTAAATACTCTTTTGTTAATTTATCTAATTTAATATTTTCAATTGCTATTTCACTGTTCGAACTTTGTAATCGTTCTTCATGAATTGCCTTTCCAATTTGTACGATTTCACTATTATCTTCAAGATTCAACCTATTTCCATGTAAATAACACTGTCTTTTACAATGGAAATAATAATTGATTAATGTTCCATTAACTCTCATAGACTCCTCCTTAAAATTAGAAATTAATCAAATGTGCTTATAAATTTATGTTATTGTTTAACTAATGCTGTATCAGTGCAACAGGCATCATCTAATTTC # Right flank : CAACGATTTTACGTCATTTTTTAATTGTCTTTTTAAAAAAACAACGATTTTATGTGCTTTCCATTGTTTTTCCCAAGTGCACCCTCTCTGTATATTTTTATTAAAATTGCACAAGAAAGCTTGGATTTATCAGCTTT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCAAAACATCTCATGTTATTGTTTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //