Array 1 279881-280414 **** Predicted by CRISPRDetect 2.4 *** >NZ_SQIG01000125.1 Escherichia coli strain LVNMSB183 NODE_2045_length_425668_cov_47.451244, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 279881 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 279942 29 100.0 38 ............................. NNNNNNNNNNGGTGAGCCAGCGCCGCAGGAAGACACGC 280009 29 93.1 38 ...........................NN NNNNNNNNAAAACATTTTCCGAGCTTTGCGATTTATAT 280076 29 100.0 32 ............................. GAGCGTAGAGATTCTCGAAACCGATCCGGACG 280137 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 280198 29 93.1 37 ...........................NN NNNNNNNNGGCCGTCGCCGGATCAGCCTGGCTATGCC 280264 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 280325 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 280386 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ====================================== ================== 9 29 95.8 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GAGCTCCCCGCGCCAGCGGGGATAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 298493-299886 **** Predicted by CRISPRDetect 2.4 *** >NZ_SQIG01000125.1 Escherichia coli strain LVNMSB183 NODE_2045_length_425668_cov_47.451244, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 298493 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 298554 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 298615 29 93.1 39 ...........................NN NNNNNNNNCGGGACGCTGCGCGATCTGCATAGCAACGCA 298683 29 100.0 32 ............................. AGACGGCGCGTAAAACTCATACGGCGACAAAT 298744 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 298805 29 100.0 32 ............................. GAAGTTGCGCGCACTAAGAAAAACAGGTTCGA 298866 29 100.0 32 ............................. CGTTCCCAACGCTGAATATTGCTGGCATAGCC 298927 29 93.1 36 ...........................NN NNNNNNNNCGTCGAGTGTAATACCCTGATCCATCGC 298992 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 299053 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 299114 29 96.6 36 ............................N NNNNNNNNNGCAAATCCAGCGAGCCGCCGACGCTCA 299179 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 299240 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 299301 29 100.0 32 ............................. TAAAAATCATCATGGAAAATCAACCCGGCGAC 299362 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 299423 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 299484 29 100.0 40 ............................. NNNNNNNNNNGCAAACCGTGGCAAACGCAATTAACAAAAA 299553 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 299614 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 299675 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 299736 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 299797 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 299858 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ======================================== ================== 23 29 99.0 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //