Array 1 165575-164690 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAJB01000033.1 Salmonella enterica subsp. enterica serovar Saintpaul strain CFSAN004090 NODE_3_length_652915_cov_107.115_ID_1557, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 165574 29 100.0 33 ............................. TTGAGCACGACGAAATTTGGGTTTGATGCAGCC 165512 29 100.0 32 ............................. GTTATTCAGTTTATTAAATTTTTCCGCCAAGT 165451 29 100.0 32 ............................. CAACTGTATTTTGCGTTATTACGCTGAACCAG 165390 29 100.0 32 ............................. CCGAGGTCGGAGCGGATTGACTTAAACGGCAA 165329 29 100.0 32 ............................. TGCAACAGCAACAGGAGAGAATGCGGCAGCGT 165268 29 100.0 32 ............................. CGTCAGTTGCTGGAACTGGGGCACGATCTGGT 165207 29 100.0 32 ............................. GAGCGGCTAAACGATGAATTAACCAGGGAGCG 165146 29 100.0 32 ............................. GAGCGGCTAAACGATGAATTAACCAGGGAGCG 165085 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 165024 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 164963 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCCTCCTGC 164902 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 164841 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 164780 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 164719 29 96.6 0 ............T................ | A [164692] ========== ====== ====== ====== ============================= ================================= ================== 15 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 183143-181834 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAJB01000033.1 Salmonella enterica subsp. enterica serovar Saintpaul strain CFSAN004090 NODE_3_length_652915_cov_107.115_ID_1557, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 183142 29 100.0 32 ............................. CAACAGCGTCCCGTATTCTGTATCGTTGACGG 183081 29 100.0 32 ............................. CGCATTACTACCGGGATTAGTACCTATCAAAA 183020 29 100.0 32 ............................. GCAGACGCTGCCGTCCCCCCGCTCGACGCTGA 182959 29 100.0 32 ............................. CAGCGGGAAAACGTCCAAGTGCCCATATCCCC 182898 29 100.0 32 ............................. CCTTCAGAACATGCGCGGTATTATTTTTGACC 182837 29 100.0 32 ............................. CCGTGGAAAGAACCAGAACGCTGGATATTGGT 182776 29 100.0 32 ............................. ACCACATCAATGACCACATCACGCAGATATTA 182715 29 100.0 32 ............................. CGCCGTGTTTACTTCAATAGCGACGTTGTGAG 182654 29 100.0 32 ............................. AGGTTGACCATCGTCAGCTTCATAAAGATTTA 182593 29 100.0 32 ............................. GGCGTTATTGAGTGGGAAAAAATCGTAAGCGC 182532 29 100.0 32 ............................. ACGCTCTATAGCCATTAGGTGCGCCACCACTT 182471 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 182410 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 182349 29 100.0 32 ............................. CGATAATTTATAAATTTTCGTCCACTCATCAA 182288 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 182227 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 182166 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCGGACCAATCGACTA 182105 29 96.6 32 ...................A......... CGCCGCCAGCTGGAAAAATGCCGCCTGTTAAT 182044 29 100.0 32 ............................. CTCCAGCCGACGCATTCGCTTGATCGCTTTAT 181983 29 100.0 32 ............................. GGGCTGGACCTCGATTTATTTAATACGTTTAT 181922 29 100.0 32 ............................. TCCCAACTCGTCAGGGCGGTTATCCAGCGCCA 181861 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATTAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //