Array 1 86414-88090 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCOY01000003.1 Corynebacterium striatum strain NSCs27 Scaffold3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 86414 29 100.0 32 ............................. CTTGGCCGCAGCAGCAAGCTGCTGATCATTCA 86475 29 100.0 32 ............................. CTCGCGAGACCCTCGCGAGAGTTTCCGAAGGG 86536 29 100.0 32 ............................. ACGGGTATCCGCCACGGAGCGCGCCTATTCAA 86597 29 100.0 32 ............................. CCAGTCCACGCCGCAACAGCAGCGGTGACTAG 86658 29 100.0 32 ............................. GTGGCTAGGCACACGATCGCTGCCATCACAGT 86719 29 100.0 32 ............................. GCTACGGCCTGCGGACTGGGCCATATAGTCGA 86780 29 100.0 32 ............................. ACCCTTCATGGTGCCAGCCATGCTGGTCACAG 86841 29 96.6 32 ............................T CCGTTTGGTTGGTCACCGGGGTTGGAGGTGGT 86902 29 100.0 32 ............................. TCGCGATTAGCGCCCCTGGCGACGCCGAGGTT 86963 29 96.6 32 ............................T CACCCTCGACCGATACGACAACACGGAGAACA 87024 29 100.0 32 ............................. GACAGCGGGAAAGGGGCCGCGAGAATCTCCCA 87085 29 100.0 32 ............................. CATCGGAACATATCCGCCGGCGATTTCACGGA 87146 29 100.0 33 ............................. CCGTTTGCAGTCACGAAATACGACACCAAAGTA 87208 29 100.0 32 ............................. AGTCCGACTGTGTAATTATCGACGAGCCGTGG 87269 29 96.6 32 ............................G GATTCGCGTGAGGAGCGTATGCGGATTAGTCC 87330 29 100.0 32 ............................. GCGCCGAGCTCGTGGCTGTCCGGCTCGCCGGG 87391 29 96.6 32 ............................G TTTCATCCTGAATAGCGTATTCGGGGTTGCGG 87452 29 100.0 32 ............................. AACGCCTAGCCAAAGCACGAAAGGCAATCCAA 87513 29 100.0 32 ............................. TAGCCCGCACCGACTACGCCGGCCAGTTCAAA 87574 29 96.6 32 ............................T CGCTAGGTTGATAACCGGAACGTGTCGGTTAC 87635 29 96.6 32 ............................G CTCGGCGCGGGCGATACCCGTCTAATCGTTCC 87696 29 100.0 32 ............................. GCATCAACCGCGAAGAACTCAACCAACGCACC 87757 29 100.0 32 ............................. TGACGCCGGACGGCAAACTGAAGTATCACACC 87818 29 100.0 32 ............................. TCCAAGAGAACGGCCAATGGCACCAAGTCACC 87879 29 100.0 32 ............................. ACACTAGTATGGCGATGCCAGCACCCAATACA 87940 29 100.0 32 ............................. TAGCCGCTACCATTCCACCTGCCATGTGCCCG 88001 29 96.6 32 ............................G CCGGAGACCCGCGTAGCTGGCGTGCCGCCGCT 88062 29 89.7 0 ................T.....A....G. | ========== ====== ====== ====== ============================= ================================= ================== 28 29 98.8 32 GTCCGCCCCGCGTAAGCGGGGATGAGCCC # Left flank : GTGGACAATAGCGCCGAGTCAATCGATGTAGAGCTGCTTTTGTGGAACGAACTTGAAAATATTGCGGCTGGTACTAATTGGTCAGACTTTGATCGGAGTTCTCCATGATGGTGCTCGTCGTTACTGCATGTCCCGCCGGCCTGCGCGGTGACCTTACTAAGTGGTTACTTGAGATTTCACCTGGGGTGTTTGTGGGTCGTCCATCAGGGCGCATTCGTGATCTGTTGTGGGAACGTTGCGTAAGTTTGTGCAAAGATGGCCGCGCTATTTTGGTTTTTAGCTCCGATAATGAGCAGGGGTTGGATTTTCGCGTTCATCGCCATGAGTGGGAGCCTGTGGATTTTGATGGTGTCACCCTCATGCGAAGAACCACTGCGCCATCAAAAGCTCAACGCCGTACCGGCTGGAGTGCTGCCCGAAATGCTCGTCGACACTGACCGTTACACCATAAGTCGGATCTGCTAGCCTCGTTTTTGGCTCTTCCACGCTGGTCAGTAAGT # Right flank : CTTCCATTCTGCTGTGGAAGGTACAGAAAGAAAGTCTGACCTGTGAAACGTGGGGATAAGATTTTTCTGTTAAGAAATACCCGTTTGCCCCACAGTTTTCCGCGGATTTGGAAGAGTGTTTTCTGCGGAACGTAGTTTTCAAAATCGGACCACACGGTCCCTACATCCTCATCACAAGATACGAGCAATCCCCATTTATGTTTTTCGCAGAGGAAGCGGATGACCTGGACGTACTCGAGTCTGTTGGAAGAAATGCAACATGGTGCTGGAGTGAAACCCTATACAGCGTCGAAGCGACGTTGGTTATCTTCGCATACATTGATGACGTCCATGTTGCTACTGGGCCAGTGGAAGATCATTGCTCTAGATCTTGAATTGAGTCACCGAGCGCTGTGCGAGGCGGGGTTGTGAGGATTAGCGGTCGGATGCTCAGTGTGGTTTTAGTAAATGTATTTATCTGCCTTGAAAGTTTGAGCCGTCCCAACTTTTAACCGCCAGGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCCCCGCGTAAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTAAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 11085-13189 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCOY01000014.1 Corynebacterium striatum strain NSCs27 Scaffold14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 11085 29 100.0 32 ............................. ACACTTTAACCGCTAGAAAGGACGAATAATGA 11146 29 100.0 32 ............................. GAATTTAAGCTGTCTGGTAAATCACCGGGTGC 11207 29 100.0 32 ............................. GGAATTTACGAGTGCCTTGAAGCGCACACATC 11268 29 100.0 32 ............................. CTTGCGGCCCTTGCTGCGGGCGCGGCGGTTGG 11329 29 100.0 32 ............................. GTGGCTTTGTTTCCCCAATTCACGCCTGTTGG 11390 29 100.0 32 ............................. TCGTCGAGGTTTTGAGGTTGGGGGGATTTATC 11451 29 100.0 32 ............................. TTGGTCACCGAATCTTTTTCAAGAAGCAAGAC 11512 29 100.0 32 ............................. CGCTTCAAGCGTGACATGCCAGAGGGGGCGAG 11573 29 100.0 32 ............................. TGGAATATTTGAAAGTAATGCCACCAGGAAGA 11634 29 100.0 32 ............................. AAATCCCCGGACCCATTGACGCAGCAGGGCCG 11695 29 100.0 32 ............................. AGTACTGTGCACCCGCACCACCACCATCATGC 11756 29 100.0 32 ............................. TATTGAGGTCCTAGCGGGGCACATAGAGGGTC 11817 29 100.0 32 ............................. GTGCGAGCCCTTACGCAGCACCTCGGTTGCCC 11878 29 100.0 32 ............................. ACCCCAACCGGCAACGGCCACTACGACCAACG 11939 29 100.0 32 ............................. GAGACCTGGGAGCTTCTCGAGGTCGAGGGCAC 12000 29 100.0 32 ............................. AAGGTCAACACCCCACTGTTGCAAGGTTTCCG 12061 29 100.0 32 ............................. GTGTAGGCCAGGTCAGCGGCCAACGGCAGATG 12122 29 100.0 32 ............................. TACAAAGATTTAGGAATTAAACGAAGTACACA 12183 29 100.0 33 ............................. ATGTCCACGCACAAGGTAGAAGCTAGGGCAGAG 12245 29 100.0 32 ............................. AGTGATTGGGTGCAGGTGCGCAGCCTTACCGC 12306 29 100.0 33 ............................. TAGAAAAGTTCATCGGCAGACTGGATAATCCCA 12368 29 100.0 32 ............................. AACGTGTAAACATCCTCGATGTCGACGCCTTC 12429 29 100.0 32 ............................. ATCGTAGCCACGGCGGCGCATTTCCACGGCGG 12490 29 100.0 32 ............................. TGAAGTGTCTTTCTCTAAAGCGGGCGGCAGAG 12551 29 100.0 32 ............................. TAAAAGTCTCGATTGGAGGGAAAGACATCGTC 12612 29 100.0 32 ............................. AACGCTACCAGCGTCTTAGTCTCGCAGCGTGT 12673 29 100.0 32 ............................. ACCCCAATGTCGGCGCACGAAACGACGGAGCG 12734 29 100.0 32 ............................. TTGGCGCGCCTCGTCTCAGGGGCTACTAGCCC 12795 29 100.0 32 ............................. ATCGACACTGCCCAGCAAGCGACGCCGCCGAG 12856 29 100.0 32 ............................. ATCATTGTGGAACTTCGGGAAGATGGGGACGG 12917 29 100.0 32 ............................. GGCCAAGTCGATACAGACCTTTTGTCCGCTGT 12978 29 100.0 32 ............................. TCCACGGCCCCGACGTAGAGGTCGCACTCCGT 13039 29 100.0 32 ............................. TTCGCCAACTGCGGCGCGGCCTTAGCCAAAGA 13100 29 100.0 32 ............................. GGTTAAACGCCCGCGAGCTTTGCCTCGTCCTG 13161 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 35 29 100.0 32 CTCTTCTCCGCGCACGCGGAGGTATTTCC # Left flank : TAAGGAAGCAACTACGCCGGGAGATCCATCGGAAGAACTTACTCGTCGACATGCTGGAAGTTCTCACAGAGGTACTCACGCCCCACTTACCTTCACGTGATGACGATCGACTCGTCTCTGGGCGCGGCGATGAAGTCGCCGGACACACACAATATGGACGGCGCTGAATGTTTCTTGTAATCACAACCACCAGCCTCCCAGACCACATGCATGGCTACCTTTCGCGTTTCCTTTCGGAAGTAGATACCGGTGTTGATGTAGGAAACGTTTCCCGTCGCGTCCGCGATAACCTGTGGCGACGGCTTTCCAATGCCATCGCCGACGGCAGCCTAACCATGATCAACGAGGACCGGACCCGCGAACAGGGCTTTGCAGTCAACACTATGGGACCGCGACGCCGTACAATCATTGACATGGACGGCCTTTTACTTGCGTGCACGTTTTCGCGAGAACATACGCAAAACCGCACCGAGACAAACTAAAGTTGCTGTTCAGGAAGT # Right flank : CAGGGGGCCAGGGCGCCGCGCCGTGGTGAGTGAAGCGTCCTGGGTTTAGTTCCTACCTCAGCTAAGGAAGGATTGAACTATGCCTAGAAAGTATTCCGTCGAGTTCAAGGAGAAGGCGGTCCATCAGATCATCGAAATGGTCCGCCTGGAGTCTTGCTCACTGCAACGCGCCTATACGGAGGTCGGTGAGCTCCTTGGAGTATCTCACCACACGTTGCGGGCTTGGTACCGTGACAGCGCTTCAGTACGTGATGACTCTGACGCTTCAGGCGGCGAGACAATGGAAGAAGAACTCAGGCGTCTGCGCCGCGAAAACCGCGAACTAAAACGAGCAAACGGGATTCTTAAGACAGCTTCGGCTTTTTTCGCAGCGGAACTCGACCGAGCCACGACCAAATGATCTCCTACATCGACACGTATAAAGATCAGTTTGGGGCCCGGGCCCATCTGCCGAGTTTTAAAACAGGCAGATCGTGGATTCATTACTTCACGTGGCTACC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTCTCCGCGCACGCGGAGGTATTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA //