Array 1 1590652-1591280 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP041771.1 Pseudomonas aeruginosa strain A681 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1590652 28 96.4 32 .............C.............. TCCCTTAGCGCCTGAGCCTCGGCTTCGAGCTT 1590712 28 96.4 32 .............C.............. ACGATGATCTATCAGACCTATCGTGGCTACGC 1590772 28 96.4 32 .............C.............. AGGTTGACCAGCATGGCCGGCATCGACAGCGT 1590832 28 96.4 33 .............C.............. ATGCAGCCAGGGCTTACTCCGCTGCTGCTGGAC 1590893 28 96.4 32 .............C.............. TTGAGCTTGTCGTTGTACTCGTCGAGGCTCAT 1590953 28 100.0 32 ............................ ACGTCGGAACGCAACTACCTGACCGCGTTGGT 1591013 28 100.0 32 ............................ CGCAACGTTCGTGATCTGCCGTTCGCCGCCCA 1591073 28 100.0 32 ............................ TCGGCGAGGCGATCGATCATGCGAATCAGCAA 1591133 28 100.0 32 ............................ ATCGACCACGACAGTGCTTCCCTGGTCTATTC 1591193 28 100.0 32 ............................ ATTGGCCGTGCAAGGTCCACCAGTCGATGCTT 1591253 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 11 28 98.4 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACACACTTGTTCGACAACGCGAAAGTGCGCTTGAGATCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCACTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTTGCATCGCCCATCACAAGACCTTTCGCGCTCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGAGCAGCAAACATGAAGCCCGCTCGAACGTCCCGTAGGGCGAATACCGCCACAGGCGGTATCCGCCGATGCCCTGGAGAGCCGGCGGATGACCGCAAG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTAAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2945452-2947096 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP041771.1 Pseudomonas aeruginosa strain A681 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2945452 28 100.0 32 ............................ TGATCAAGAAGAACCCGATGGCGCCACTTGAG 2945512 28 100.0 32 ............................ ATCCTATCGACGACAAAGTGCTCGAGCATCTC 2945572 28 100.0 32 ............................ TGCCGGACCTGCTCCGCCACTGCGGACTCCAA 2945632 28 100.0 32 ............................ AGAAAGCCAAGATCTACCGCTGGAGAAAGGCG 2945692 28 100.0 32 ............................ GAAGAACATCGCTGCGGCGATCTGGGCCTCGC 2945752 28 100.0 32 ............................ AGGGGTTCGTCCCTGGCCGAGGTGGCCCGCTC 2945812 28 100.0 32 ............................ AGGAAACCAGAGCAGGAGGATGGACTATGACC 2945872 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 2945932 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 2945992 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 2946052 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 2946112 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 2946173 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 2946233 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 2946293 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCGCTGGCGG 2946353 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 2946413 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 2946473 28 100.0 32 ............................ TGTCCGGTCCCGGAAAAGACCAACGCGGGAGT 2946533 28 100.0 32 ............................ TCTACGAGCAGACCGAGTTGAAAGGACAGGAG 2946593 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 2946649 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 2946709 28 100.0 32 ............................ TCTGTCACCTCCTGGGAGGCGGCCTCGGCCTG 2946769 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 2946829 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 2946889 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 2946949 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 2947009 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 2947069 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 28 28 99.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATAAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 2957320-2955971 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP041771.1 Pseudomonas aeruginosa strain A681 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2957319 28 100.0 32 ............................ CAAAGCTCTGGTGTGGTTTGCTCGCACTCAAC 2957259 28 100.0 32 ............................ GTCTCGCGCACATGCGGAAACCAGCCGGCACG 2957199 28 100.0 32 ............................ GATTCGGGGAACTCAAGCCGCTTGCTTTGCAT 2957139 28 100.0 32 ............................ TGCTGGCGCTGATCAGTTGGAAAGGGCTTGCT 2957079 28 100.0 32 ............................ TTCGAGGCCGACATGCTCGACCGCAGCAAGGT 2957019 28 100.0 32 ............................ AATGGCAGCAGCGCGAAAAGCTCGCGGAGTTC 2956959 28 100.0 32 ............................ TCGCCGATCAGCAAGATGGAGGCTTGGCTGGA 2956899 28 100.0 32 ............................ CAGACCGGCATCGAGGCGCGTCGCGGCCATCG 2956839 28 100.0 32 ............................ TGGAAGAACGCACTTGGACGGTCAGCATTGGC 2956779 28 100.0 32 ............................ ACTCTGCGCCAGAGGTCAGCACCAGAAGATCA 2956719 28 100.0 32 ............................ TATAACGATATTGATGCCGGATTTAGGCCAAG 2956659 28 100.0 32 ............................ AGGTAGACGTCCTCGCCCACACCGATGTCGCG 2956599 28 100.0 32 ............................ GTCCAGGCACGTTTGCTCGCGCTTTGATCTCA 2956539 28 100.0 32 ............................ GAAAAGAGTTGACTGCACAGTGGGCATCACCT 2956479 28 100.0 32 ............................ AATTGCAGGTGACCGACAGGCTTGCGGTACCA 2956419 28 100.0 32 ............................ TTCTGCGCAAGTTGTTCCTCGGACATCCCCGG 2956359 28 100.0 32 ............................ AGCTCGGTCGCCCCGGGGCGGCCGGCGTAGTA 2956299 28 100.0 32 ............................ AGGTCGGGGATGGATCGAACCACCCGCGCGAC 2956239 28 100.0 32 ............................ GTGCCCGGGGCCGACTCCGAACCCGACGAGCA 2956179 28 100.0 32 ............................ TTGTCGCTGATATCGAAGGTGTCCCACTTCCG 2956119 28 100.0 32 ............................ AGTAGCCGTCGGCGTTGTGACAAAGCCATTCC 2956059 28 100.0 33 ............................ GCACGGTAGGTGCCGGCGCCCACGCCGGAGGCT 2955998 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 23 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCTACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //