Array 1 19220-18891 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEVZ010000009.1 Erwinia amylovora strain Ea160-3-51 Ea_160-3-51_contig_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 19219 28 100.0 32 ............................ TTTACGTTTGCGTTAACAGTAAGCTCTGCAAC 19159 28 100.0 32 ............................ ATCGCACCCCACTGATTGAAGAGCAGCACACT 19099 28 89.3 32 ......C..T..........T....... TAGCAATAAATTCGATAGACGCTGATTTGCGT 19039 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 18979 28 96.4 33 ..........................G. GCCAACGTTCACTGTCATTTAGCCACGCTTCCG 18918 28 78.6 0 .....A........G.....T...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 93.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGTGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGACTGGCGTTATAGGATGGTTTTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTTAATGCGATAAGCCAGTTAGCCCGGTAATGTAACG # Right flank : GGACTGAATGACTTCTCCCTTGCCTGAAAGCATACTTTGCTTCACGGGCTTCTCATGCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGCTAAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAAGTGGGGGTTTTTCACGGTTTTTTTACAATAAAAAAAGAAAGATCTTATATTTTTTTTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTGAAATTTTTTTACTCAATAATTTCCAGAACTTTCATTTTGAGTTAGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGTATTGAATGAAATGCAAA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 30420-28681 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEVZ010000009.1 Erwinia amylovora strain Ea160-3-51 Ea_160-3-51_contig_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 30419 29 100.0 32 ............................. CAATTTGTATACAGTCGAGAACGTGCCTTATG 30358 29 100.0 32 ............................. AACCTTTTACCATTGTCATAACAATATCTTCA 30297 29 100.0 32 ............................. CCAGGGGAGTTTCTTATTTTCCGGAGAGAATG 30236 29 96.6 32 ............................T AATGGACGAGATTTCACAGAAAATATCTGTTC 30175 29 100.0 32 ............................. TCTTTATGACGCAAAGCAAGCCTCAGCCGAAC 30114 29 100.0 32 ............................. GCTACTACGTGTACGCACAGCCGCTGGCCAGT 30053 29 100.0 32 ............................. CAGATGAGGCTGCAAATTCCAGGCACTTTTTA 29992 29 100.0 32 ............................. GATGGTCGTACCGATGTTTGCGAAAGATTCGC 29931 29 100.0 32 ............................. ACGGTCAGATGGTGGCGCTGGTTGCGCTGGCA 29870 29 100.0 32 ............................. CTGTTTATGAAAAATGCCAACAAACAGGAAGC 29809 29 100.0 33 ............................. ATTTTTCAGGAACGGGCCGACACGAAAATTTAT 29747 29 100.0 32 ............................. ATATTTACTAGCATTTCCCCATGCTGTATCAC 29686 29 100.0 32 ............................. CTGGAGCATGAGACGAAATCGGGGGTAGTGCT 29625 29 100.0 32 ............................. CCGGTTCAGGTTTGATAGGTTCTGCCTAACTC 29564 29 100.0 32 ............................. TTCGCATACGACAATCTCCCGGCACTGATTAA 29503 29 100.0 32 ............................. CGCGAGTACCCATCCATCCCCGCAGAGGCATT 29442 29 100.0 32 ............................. GCAGGGCCGGTTTACGTTGCGCAATCGGAGAT 29381 29 100.0 32 ............................. AGGGTGACGCAACGATTGTTGCAATTCCTAAC 29320 29 100.0 33 ............................. CACCAGTGTGTACATTCCAGACTCAGAAACCAC 29258 29 100.0 32 ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 29197 29 100.0 32 ............................. GACGCTCAAATCAGTGGCGGCGAAACCCGACA 29136 29 100.0 32 ............................. CCAGAGGGGATTTAGCAAACGTCATTTCTGAC 29075 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 29014 29 100.0 32 ............................. CAGCTATTCCCCGCATCGGTCAGTACTGCGCT 28953 29 100.0 32 ............................. TGGCCCACAATGGTAAAACCGGCGGCTTTCCA 28892 29 100.0 32 ............................. GCCAATGGATTCAGGATTGGAGCCAGAATTTA 28831 29 100.0 32 ............................. AAAAAAAGCCTAAAGCTCGAAAGAATAAAAAT 28770 29 96.6 32 .........A................... ATGATGGAGCTGATAGTTTTATTAGATGTCGA 28709 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.1 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : CGAAACGGTGCTGGCTGCCGGAGAGATCTCCCCACCCCCACCCCCCCCCCACCCCCGCCGGATGCCCAGCCGGTTGCCATCCCTGAACCACAGTCTTTTGGCGATGTCGGGCACCGGAGTGCGTAATATGAGTATGCTGGTGGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGACGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTTAATCAGCTTTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGA # Right flank : ATGATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAAGGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCACA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 42275-39470 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEVZ010000009.1 Erwinia amylovora strain Ea160-3-51 Ea_160-3-51_contig_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================================== ================== 42274 29 100.0 32 ............................. AACGTAATCAGTGGGCTGATATGCACGGTCTG 42213 29 100.0 32 ............................. CAGGTATTTCGGATAGCCGGTTGTCTCGGCGG 42152 29 100.0 32 ............................. TGAACGAGCGCGAGGCACCTGACGGTGCAGAC 42091 29 100.0 32 ............................. GTGGTGACCTCTTTGTGGGCGGCGTTTCTGGG 42030 29 100.0 32 ............................. ACTGAAATTTAAAATCACCGCTAACCCGCCAG 41969 29 100.0 32 ............................. GGCGATGAGGGAGTACGCGGAGCGGCAGGGTA 41908 29 100.0 32 ............................. AAAAGCCAACCGCCCGCCCGTAATAAACCTGA 41847 29 100.0 32 ............................. GTTGCAGAGACTTAAAGATCGTCTGCTAGTTA 41786 29 100.0 32 ............................. TAAATGGTTGTCCGTTCTTGGCGCAGACGGCT 41725 29 100.0 32 ............................. CGCAATTTTTAGACAATGCAGAATTTTATTTT 41664 29 100.0 32 ............................. GGAGAACGGCGGTCAGATTCCGGTAAACTGCA 41603 29 100.0 32 ............................. CCGGAGACAGTGTTGAAGCCGCAGTCACTCTA 41542 29 100.0 32 ............................. AGTGCTGAGTGTGTTAGTAGACAACCGGCCTT 41481 29 100.0 32 ............................. CTTCGAGATTAGAATATGACTCAGTACCACTA 41420 29 100.0 32 ............................. CTGTGTCAGGTTTCGCCACTTCTGACAGATTC 41359 29 100.0 32 ............................. GACTCTTAACTCATTCTGCCGCTTTCACGGTC 41298 29 100.0 32 ............................. AAAATGTTATAAGCCGTATTCCTTGCGGAACA 41237 29 100.0 32 ............................. GGTTGAATACCTTCAGGGATTTAGAGCTACCA 41176 29 100.0 32 ............................. ATAGTGCTCGACGTTAACGCGTGCGCCGTACA 41115 29 100.0 32 ............................. TACCAACTAGTACGGGTGATGCAGATCCGGTT 41054 29 100.0 32 ............................. CCAATGACGCCGCAAAACTGCGCTCTATTTCA 40993 29 100.0 32 ............................. TTAATTTTATATTCATTTCTGCAGTCTCCAGC 40932 29 100.0 32 ............................. GCTCATCTGCGCACGATGAAAGTCAAAGGGTA 40871 29 100.0 32 ............................. GGGTTAAAAATGAACAAATCAACGCTTTTCAC 40810 29 100.0 32 ............................. CAAAATCGCCGCATAGCAAACCGCTCTTTAAA 40749 29 100.0 32 ............................. CAACAGTACGCGGGGTGCTGTTTATTCTGTCC 40688 29 100.0 32 ............................. CGATCAATGACTTTATGTTAGCCAGGGAAAAT 40627 29 100.0 32 ............................. CCAACCAGCCGGCATTCAGTAGCCAGAATGCT 40566 29 100.0 32 ............................. CGGCGGCTCACAGCCCCTACGGACGTCTGTTT 40505 29 100.0 32 ............................. TTCACGCGCTCTTGTCTGCCACTCGTCAAGAC 40444 29 100.0 32 ............................. CCATCGCAGATGTGGCAATCAACAACAGGCGA 40383 29 100.0 32 ............................. GCAGAGCGAGGCGAGTCTGTTTACTTCACACA 40322 29 100.0 32 ............................. GGGCATGCGCAGAGATTAAACGCTGGGTTTAT 40261 29 100.0 32 ............................. GCCCGCAGGCAGGACGAGGAACGAACACGCAT 40200 29 100.0 32 ............................. ATGTCGAACCTGTCGGCGTATCAACCGGGCTG 40139 29 100.0 32 ............................. GTTGTCCTGTGGCTTGCTAAATTTGGATTCTC 40078 29 100.0 32 ............................. ATATAAAATGAATGAATGGATCAGGGCCTATG 40017 29 100.0 63 ............................. CCCTCGGGGAGGGCTTTACGTTGTTACTCAGAGTGTTCCCGCTCTTTTGCGGCTTAGTGCGAA 39925 29 100.0 32 ............................. GTCAATTATGGACGTACAGGTAGCAGCTACCC 39864 29 100.0 32 ............................. CCGCGAAAATCCGCAGTGAGCTGGCAATGAGC 39803 29 100.0 32 ............................. CCCAAAGGAACAACGAGAGCTATCCAAACCAA 39742 29 100.0 32 ............................. ACCAAAGGCGACCATCAGGTAGAACTGGCCTT 39681 29 93.1 32 .C...............A........... AGCTCAAATGCTACGCATCAGCACTGATTAAA 39620 29 96.6 32 .................A........... TGTCTCCAAGTTAGCAATTTAGTCTCTAAACC 39559 29 93.1 32 .............T...A........... TCATATGCGATTTTCAGCCTTTTAAGACCTTC 39498 29 86.2 0 ..........A.......A.A.....T.. | ========== ====== ====== ====== ============================= =============================================================== ================== 46 29 99.3 33 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : GTGAGCGGGGATAAACCGCCGGGCGAATGCGGGGATTGCAGGGGCAATGGGTGTTCCCCGCGTGAGCGGGGATAAACCGGTATTTATAAACGATTCATTAATACGCTTATAGTGTTCCCCGCGTGAGCGGGGATAAACCGCAGCAACCGGTGGTATTTTTCCGGGTCGGTTAGTGTTCCCCGCGTGAGCGGGGATAAACCCATTACTGGTAGTAACTCAGCAGTATTCGGTACGTGTTCCCCGCGTGAGCGGGGATAAACCGGTGATAAGCGTACCCTGCAGACGGCAAATAACGTGTTCCCCGCGTGAGCGGGGATAAACCGCCAGCTCCAGTGCTACCGCAACGCCAGATTCAGTGTTCCCCGCGTGAGCGGGGATAAACCGAGTAATTAATGATTCTGAAATCTCTCTTAATAGTGTTCCCCGCGTGAGNNNNNNNNNNNNNNNNNNGTGAGCGGGGATAAACCGTGCTGAATACCGGTAAGCCTGGCTCTATCACC # Right flank : CATGCGCTGACGAAGATGGCCTTATCACAGTCACCATCCGTAATTTGTGCCGGGAAGCGTCGACGTGACCACGATCGGCATTCTGCACCAAACCCGCCGACCATCGGCATTAAACAAGCGTGAAATTTACATCATATCATCATGGGGTTCCGCATAAGCAGGGTTAGCCTTTATTCACTACTTTCAACTGACCAGATATTTCAAATCATCTATTTTACGATAAATGCTGAGAACCATTGATATGTCAGAAGACCAAAGTCAATATGGCTGGGGATTTTTAAAAAGGGGCCGAAACCTTGAACTTATATAAATGATGGATAAATTAATGAATTTCAGGTTGATAATGGTTCTGATTATTATATTCACGTTGCTGCTGTTGTTTTTTTCTAATATCACGATGCTTAATTCAACTATCAATATCAGAATTTTTTTTAGATTAAAGTCATTATTTCCCCATTTATGGGGATAAACCTGGGCCAATGTCTTGAACCTAATGTTCC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 44921-42391 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEVZ010000009.1 Erwinia amylovora strain Ea160-3-51 Ea_160-3-51_contig_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 44920 29 100.0 32 ............................. GCGCTGGAGTCGTACAGAAAAGAGTGGGACGA 44859 29 100.0 32 ............................. GTGTAGGTCTGGATCATCAGGTCACTGCCCTC 44798 29 100.0 32 ............................. CTGGGTAAATACGGTCTGGTTGCTGCCCGCCA 44737 29 100.0 32 ............................. ACCGCGAACAGCTCAATCTTCGTTATCAGCAG 44676 29 100.0 32 ............................. CTGGAAGATGATATTCAGGCCATCACGCAGGG 44615 29 100.0 32 ............................. ATGGTGTCGCAAAGTGTCGGGCCGTGAAGGTA 44554 29 100.0 32 ............................. TTTTTGTACTGTGAGAAAACGCTGTCAGAGGA 44493 29 100.0 32 ............................. CGGCGCTGTCTATCCCCTGCGCGATCCCCTTT 44432 29 100.0 32 ............................. ACCCAGCTAGGGAATGTAGGTCTAGTCATGAA 44371 29 100.0 32 ............................. TGTGTCCCTATGGGATGTGTTGCTTCAGATTC 44310 29 100.0 32 ............................. GACGCTATAAGCCAGGCAAAAAGCCAGTATGA 44249 29 100.0 32 ............................. CCAGGATAGTCCGTTTTGATACCGTTAATCAG 44188 29 100.0 32 ............................. CGAAAAACATTGCACAAACCGAGCAGGTGGGG 44127 29 100.0 32 ............................. GTATTTATTTTTGCTCTACTTGCCGGGATGTC 44066 29 100.0 32 ............................. CCGGTTAACGTGCTTAAGGGCATCACTGAGAT 44005 29 100.0 32 ............................. TTATCACATTGATTTTATGAAATTATTTAATG 43944 29 100.0 32 ............................. AGCGGGACAGGTATATCGCATTAACACTGGCA 43883 29 100.0 32 ............................. TCAGTTCATTGGGCAACAGAACGCATCAACAT 43822 29 96.6 32 ............................T GAGGTATGTACTGCATCGTGCCCTGAACAAAT 43761 29 96.6 32 ............................C TTTTACGAATATGTCTTGTATCCCGGCTCTGG 43700 29 100.0 32 ............................. GGAAAAATTATCGAGCTGGCAAATAATAAAGG 43639 29 100.0 32 ............................. GATAATGCGGAGTTTTCGGGCACGCTAGAGGC 43578 29 100.0 32 ............................. GTGCAGAGATGCCGATATTGACAGATCCAATT 43517 29 100.0 32 ............................. CGCGATTGAAAGGGCTGTGGTTTATCGTGATG 43456 29 100.0 32 ............................. TTCCCATACCTTCACGGCCCGACACTTTGCGA 43395 29 100.0 32 ............................. CGCTTAATCAGCTCAACGCAGCGAAGGACGCT 43334 29 100.0 32 ............................. TCGCGGCAAAGCGCCTTTTGCCGCTGTATGGC 43273 29 100.0 32 ............................. GTGTTCTTCATCTGTATCCACTTCACCCACGC 43212 29 100.0 32 ............................. CAGGGTGTGTGGCTCACGCGCTTTCATCACGT 43151 29 100.0 32 ............................. CATAACGCTTCTTTTCTTTGGTTCTTCTGTCA 43090 29 100.0 32 ............................. TTCCCGCGTTTCGTGGGATACCCCTTTTATGC 43029 29 100.0 32 ............................. CGAACCTATGCGGCATTAGCGGATGCCGCCGG 42968 29 100.0 32 ............................. GTGTTCCGCCTGGCTGGGAGAATGTGGATGGC 42907 29 100.0 32 ............................. CTGAAAATGAGTGGTGGGCAGCCGGGAGTTAG 42846 29 100.0 32 ............................. AACTTACGGTGGCCTGGCTTGAACTTCCGGAC 42785 29 100.0 32 ............................. CCGGGCGAATGCGGGGATTGCAGGGGCAATGG 42724 29 100.0 32 ............................. GTATTTATAAACGATTCATTAATACGCTTATA 42663 29 100.0 32 ............................. CAGCAACCGGTGGTATTTTTCCGGGTCGGTTA 42602 29 96.6 32 ............................C ATTACTGGTAGTAACTCAGCAGTATTCGGTAC 42541 29 100.0 32 ............................. GTGATAAGCGTACCCTGCAGACGGCAAATAAC 42480 29 100.0 32 ............................. CCAGCTCCAGTGCTACCGCAACGCCAGATTCA 42419 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 42 29 99.8 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGTCCACGAAAAAGGCAGGGGCGGTTAACTCCCGGCCTTATTCGGGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCACGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAAAGTGGAAAAAAGTTGGTAGAATTGTAGGGGGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : AGTAATTAATGATTCTGAAATCTCTCTTAATAGTGTTCCCCGCGTGAGNNNNNNNNNNNNNNNNNNGTGAGCGGGGATAAACCGTGCTGAATACCGGTAAGCCTGGCTCTATCACCGTGTTCCCCGCGTGAGCGGGGATAAACCGAACGTAATCAGTGGGCTGATATGCACGGTCTGGTGTTCCCCGCGTGAGCGGGGATAAACCGCAGGTATTTCGGATAGCCGGTTGTCTCGGCGGGTGTTCCCCGCGTGAGCGGGGATAAACCGTGAACGAGCGCGAGGCACCTGACGGTGCAGACGTGTTCCCCGCGTGAGCGGGGATAAACCGGTGGTGACCTCTTTGTGGGCGGCGTTTCTGGGGTGTTCCCCGCGTGAGCGGGGATAAACCGACTGAAATTTAAAATCACCGCTAACCCGCCAGGTGTTCCCCGCGTGAGCGGGGATAAACCGGGCGATGAGGGAGTACGCGGAGCGGCAGGGTAGTGTTCCCCGCGTGAGCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //