Array 1 1086-18 **** Predicted by CRISPRDetect 2.4 *** >NZ_APMV01000016.1 Dickeya zeae DZ2Q Contig16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1085 29 100.0 33 ............................. CGTTTACCGCCCCATTTTTCGCCGTATGCGCCA 1023 29 100.0 32 ............................. TATCATAAAACATTGATTTCCCGTTGCTTCGG 962 29 100.0 32 ............................. CCAGCTCGCGAAATATAAAATCACCTACATAA 901 29 100.0 32 ............................. GCGCTGCTGACGGAAGGTTACCGCGATATCGA 840 29 100.0 33 ............................. GGGTACAGGCAGCGCGCCAATGTCGCTACAGGC 778 29 100.0 32 ............................. TTAACCCGCAGGATATCGAATAATTATGAACT 717 29 100.0 32 ............................. GGTATCTAATGCGCCTTTAGTTCTTTGTGTTG 656 29 100.0 32 ............................. CTGGTTGCGCCACTTCGGTAACTCGTATAGAA 595 29 100.0 32 ............................. TTTACAATCCGCCGCGTCTGCGTTTTGCGACC 534 29 100.0 32 ............................. CTTAACGCCGATTTGACTTTCGTTGCGTGCGA 473 29 100.0 32 ............................. ATACGAACCGTTTTACCCGTACCAACTTCTGT 412 29 100.0 32 ............................. GCGCGTGTACACCGGGTCGCTGGTGTCAACCA 351 29 100.0 32 ............................. GCAAAAGAATGGGGTGAGGTTCAAACCGACGC 290 29 100.0 32 ............................. CGACTTTAGTAACTATTGGGATCAAGGGGCAG 229 29 100.0 32 ............................. ATGATGAGACAGGGCAAGTCGTAGCTCTGAAT 168 29 100.0 32 ............................. GCATGTAGTAAAGCGCGTCCGTAAGGGGAAGC 107 29 100.0 32 ............................. GAATACTCAAAACAACATCAGGTTAAACGAAA 46 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 18 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGATTGAAGACGTGCTGGCCGCTGGCGAGATTGAGCCACCGCAGGCACCGCCAGACGCACAACCGCCCGCCATTCCCGAACCGACACCCTTTGGTGACGCCGGGCACCGGGGGCATGGCGGATGAGCATGCTGGTGGTGGTAACGGAAAACGTGCCGCCGCGCTTGCGCGGTCGGCTGGCGGTTTGGCTACTGGAAGTGCGCGCCGGGGTTTATGTGGGCGACACCTCGCGCCGGGTACGGGAGATGATCTGGCAGCAGGTGGTGGAACTGGCCGAACAGGGCAATGTGGTGATGGCCTGGGCCACCAACACCGAGTCCGGTTTTGAGTTCCAGACCTTCGGTGAAAACCGGCGGATGCCGGTGGATCTCGATGGTTTGCGGTTAGTCTCTTTTCACCCCGTTGAAAATCAGTGAGTTAGCGCTCTTTAACAACCGGGAAAAATCGGTAGAATTTTCCTGCCTTTAAAATGCCTTATAAAACAGGTATATACTTTTAGA # Right flank : GGGGGGGGTAACCCCCTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [8.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 438431-435919 **** Predicted by CRISPRDetect 2.4 *** >NZ_APMV01000012.1 Dickeya zeae DZ2Q Contig12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 438430 29 100.0 32 ............................. ATGATGAGACAGGGCAAGTCGTAGCTCTGAAT 438369 29 100.0 32 ............................. GCATGTAGTAAAGCGCGTCCGTAAGGGGAAGC 438308 29 100.0 32 ............................. GAATACTCAAAACAACATCAGGTTAAACGAAA 438247 29 100.0 32 ............................. GGGGGGGTAACCCCCCTTCGTTATGCGACAAT 438186 29 100.0 32 ............................. CGTCTACCGCGTTTGTATTGTCATACTTCGGT 438125 29 100.0 32 ............................. ATCGCATTGACGAATTGGCTGCTGACACAGCT 438064 29 100.0 32 ............................. CCGCAATCAGTAATAATGACATTTTGATAAAA 438003 29 100.0 32 ............................. GCGACCCAAAAATACGGCCAGGTCGATCAGGT 437942 29 100.0 32 ............................. GCCTGCGATTATTAGCGAGCCGAGTAGTTCAG 437881 29 100.0 32 ............................. ACCGTATCGGCTTCTAGTGTGGGCTTGCGCGG 437820 29 100.0 32 ............................. TATTGTTCAATAACTTCGGCAGCTTCGCGCCA 437759 29 100.0 32 ............................. GGCCGCCTGTGACGCGGTTACTCGCCCCATCC 437698 29 100.0 32 ............................. TGTATTGGATGTTTTTTTGGGTGCTGGGAGCG 437637 29 100.0 32 ............................. GCCATGTTGGATTGGATGTCTGGCGAGTTCGG 437576 29 100.0 32 ............................. TTGGTTTGGGATGAGGTTTCCATGCGATTTAT 437515 29 96.6 32 ............................A CAAAAAGTCGGTGGCGGTCGCCGCCCATTCCC 437454 29 100.0 32 ............................. AGCACTTGCTCTACACGCCACTCATAAAAGCA 437393 29 100.0 74 ............................. AGGTAAAATATCAAACCCCTCTTGTAGCGCGAGTGTTCCCCGCGCTGACTCTTTTCAGCACTGGAGTATAAAAC 437290 29 100.0 32 ............................. AACAGGACATGTGCGACATACTTAATATTGCA 437229 29 100.0 32 ............................. ATCCAACAATTTACCCGCAGGTTTTAACCCGT 437168 29 100.0 32 ............................. ACCAGTTGCAGAAAGCACAGGCGTCATTCAAT 437107 29 100.0 32 ............................. TACATTAGAACTGGAGAGGCAAACGCGGCAAG 437046 29 100.0 32 ............................. TAAGCCCAGTTGCCGGTCATCGAGGTCACCTT 436985 29 100.0 32 ............................. ATTTCAGGCCGATGCAAAATGCATCAAATTCG 436924 29 100.0 32 ............................. CGGGCAATTTCCCGGCTTTTGCCATCGCGACA 436863 29 100.0 32 ............................. TATATTTTCCGGGGTCGTGAGTTTAAACGAAA 436802 29 100.0 32 ............................. CAACAGGCGTTGTTACCGATGCACTGCTGATC 436741 29 96.6 32 A............................ CGAGGAGTTTTTGATGCGCGGTACGGGTATCC 436680 29 100.0 32 ............................. GTGGAACCCGCCGAACATGACGAACGCAACGC 436619 29 100.0 32 ............................. CGGTTACGCGGGGCCAAAAATGGCGCTTTGTG 436558 29 100.0 32 ............................. TATCAGATACCATCCACTTTATCGGCTGACAT 436497 29 100.0 32 ............................. CGCTTTCGCCGGCATGCCGTTGCCCTGGCCAC 436436 29 100.0 32 ............................. GTCAGAAATAGCTAACCGTCGAAATAGGAACA 436375 29 100.0 32 ............................. GGCGTGGATCTTTCTGCTATCGCCGATGCGCA 436314 29 100.0 32 ............................. TACCAGATACCCTCTACCCTATCCGCTGACAT 436253 29 100.0 33 ............................. CATTATTTTACCCAATTGGTACATTTTTTAGAT 436191 29 100.0 32 ............................. AGTGATAGGTTCTGGTGTTTTCTGGCGGCACA 436130 29 100.0 32 ............................. AAAACGAGCTGGTAGATGGCGTGTGGACACGT 436069 29 100.0 32 ............................. CCTGTTCGATCCACCTAGCAATCATTTCTGCC 436008 29 100.0 32 ............................. GAGACAGATACCTAATGAGCGTACCTGTGTGG 435947 29 86.2 0 ............T............G.GT | ========== ====== ====== ====== ============================= ========================================================================== ================== 41 29 99.5 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GGGCA # Right flank : TAACGTAATAGCGCGGCACAATCCGTCGCGATGCGCTGGGCTTTATTGTGATAATATTCACATCTATCGTGAATTATGTGTGTGTAATTTCTTTTTTATGTGAATAAAACCACAAAATAGGTTGTCATCTCCGGGTGAAATAGCGGTATTCGCCGGAGAGATGACCGTGTGGTCGATAAGCGGGAGCCTTGTATGACTGATTTAACTGCAGCAGCGCAGCGTGCGCTGGGATTGATGGATTTAACCACCCTGAATGACGACGACACTGATGAAAAGGTGACGGCCCTGTGTCGTCAGGCCAATAGCCCGGCGGGGAAAACCGCTGCTATTTGCATCTACCCACGTTTTATACCGCTGGCGCGTAAGGTGCTGCGTGAGCAGGGGACGCCGGATGTTCGTATCGCCACCGTGACCAATTTCCCACACGGTAACGACGACATTGATATCGCGCTGGCGGAAACCAATGCGGCTATCGCCTACGGTGCCGACGAGGTGGACGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 250430-250042 **** Predicted by CRISPRDetect 2.4 *** >NZ_APMV01000024.1 Dickeya zeae DZ2Q Contig24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 250429 28 100.0 32 ............................ AAGATAGACAAGGCAGACGCGTACAACACCAG 250369 28 100.0 32 ............................ GCGAGCGATAAATTAGGCATCAGTGATGTGAT 250309 28 100.0 32 ............................ TGTCCTGTTTTGTCGTGTAAAGCGTTTGCATG 250249 28 100.0 32 ............................ ATAATAATTCACCCATAAAAAAAGCCGCTAAT 250189 28 89.3 32 ...........TG.....C......... TCTATCGGTGAAGAAGATAAATCCGTCGGAAC 250129 28 92.9 32 ...........TG............... ATTTCTGACACGTAACCATTGCGGCGCGTCAG 250069 28 92.9 0 ...........TG............... | ========== ====== ====== ====== ============================ ================================ ================== 7 28 96.4 32 GTGAACTGCCGCATAGGCAGCTTAGAAA # Left flank : CAGAAATCCCGCCCATAGCGATATCACACTGGTCGGACTGAAAATCTGGCATCAGGGTTTTCCAGCTGGTTTTCACCCACTCCACCTTCACGCCCAGGCTTTTCGCCAGCGACTGCGCCATCGCAATATCGATACCTTCGTAACCGCCATCCGCCCGCAGCGAGGTATACGGCTTATAGTCCCCGGTGGTACAGACCTTCAGCACCCCGCGTTCCTGAACCTGATCAAGATGAGAAGCCGCGCTGGCACTACCGGCCAGCCCCAATAACAACATCAATGAGAACCGTTTTTTCATGAAATTTCCCTGCACGTCACGCCTGTCTGGCAAAACGTCACTGTAGCACGCCATATTCACCAATATCGACGTTGACCCTTTTTTTTCGCCCCGTTATAACTCGTTGATTTTCAATGATGACAAAGGTGGGTTTTAAAAAAGGGTTTCACGCCCCAAAACACGACTTTCCCTTTCAACATCAAGCCATAAGCGATAAATTGCTACA # Right flank : CAGTAATCAAAACCAAGGCCTAGCAGCGAGAAGTGAACTGCCGTACAGGCAGAGATCGAGGGGGTTACTGGCGTTAAAACTACGCTGAGGTGGGCGACTTCGCCGCGAAAGCCTGTGCCGTGTGGGACAAAAACGCCGGGAGCGTTTTTGAACAGCGTTTACGCTGGCCCGCAGGGCGAGCCCCAGGGATGGGGCGAGTAACCACGTCACAGGCGGTCCGAACAGCGAAGGCACCGCGTCAGCGGCGTAGTTTAGCCATCAAGCCAGAGGTCAAGGAGAGGTGGCGCTTGCACCTCTCCTTGTCGTGCGTGCGATGATGTGGCAAAGAAGCGACACGGTCTATCCCGCACGAAACCACCCACCGCCCCCACATACATTCGACAAACACATTCGCCAGCAACAGCCCGGCTATTTACCAACAGCCCAAAAACACTACTCCACCGTCAACACCGCTACCGCCTTTTTACGCTGTTTGATGGCATAACCTGCCCCCAGCGCCA # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : GTGAACTGCCGTGTAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGAACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 59811-59477 **** Predicted by CRISPRDetect 2.4 *** >NZ_APMV01000022.1 Dickeya zeae DZ2Q Contig22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 59810 28 100.0 33 ............................ CAACCGCAGCATACTGCCCATCATTTTCTTTTA 59749 28 100.0 33 ............................ TCAATCAGCGTCTTATCAGGCTCTTTGCGGCCT 59688 28 100.0 33 ............................ TCAAGCATTCCCATGCCGTCAGGGTTCAGTGAG 59627 28 96.4 33 ............T............... CGCGAAGGCATCACCAAGAGCAAGAAAGAGCAC 59566 28 96.4 34 ............T............... CGGTGTAACGTGGTTCGAATCCGTTGCGGATCGG 59504 28 92.9 0 ........................C..G | ========== ====== ====== ====== ============================ ================================== ================== 6 28 97.6 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : CAGCACATCAATGTAGGCTCGGCTCTCATCGCTGCTGCCTTCCATTAGCGCCACCAGCGTCACAAATGTTGGCAGGTGAAAATGCGCAGCACGCAGTAACATGGCCATTATCGTCTCTGTGCAGATATGGGGATGACTGGATTCAATCTCCGCTTCACTCATACCAAAACCCAATAGCGAACGACGTAATAATTTCTCGTGACCAACTTCATCAAAGAAAAAATCTCGAACCGCCATAGTAAGCCCGTTGTTATGATAATTGCGCAGGGATACCGTAAGCACCCGTTCTGCAGCCCGGGTGACATGATAATATTCAACAGACCAGCGTTGTAATGCCGCATTGTCGATAGTTTTGGTAAAAATTTTACGGCTAAATTCATCCGGTTCAAATGCTGGCAAAACAATATTGTAGTAGTAATTTTCAATCTCGCAGATAAAAGCTTTACCAGAGATTGCGTTACCAGCTGGTTGTGCATCAGAGAGCAAGTGTTGCTCATCCA # Right flank : TTTGCCACGGGGCCTGACGCCGCCGTCTCCCCCACTCTATTTGGGAGTACCCCCAACTCATTTCATTCTGCCACCGCACTACGGTGGCATTTTCGGTTATAGTCCAACTCAATCGCCGTTAATGTCTTTTCCCTGTCGTTGCGGCGTCACGCGCCGATAGCGCGACGGCCAGATTTCTTGCGGTGTTTTCTCTACTGCCTGCGCAATCAGTCTTTCCCCTTTCGGCCAATGCCGGGATAACGCATTCGCCAACGTTGACGAGGCCAGCCCATGCTGGCGTGATAGTGCCGCCAGCGTGGTGCCCCGTTTTCTTAATGCGGCAATGATATCTGCCGGATGCCAGTCACCTGTTTCCATTACTGCTCTCCTTTTTCCTGCAACCAAATATCCCATTTTGGGATATATCGAAACATGACAGATATTCGATTTTAGGATATTCGTCAAGAGCATCATGTTATGGCATCAACTTACTCAGCCGAGTACCAGCGCATTATCAAAGC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : GTCTTCCCCACGTACGTGGGGGTGTTTC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 208109-207470 **** Predicted by CRISPRDetect 2.4 *** >NZ_APMV01000006.1 Dickeya zeae DZ2Q Contig06, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 208108 29 100.0 32 ............................. ACCGTATCGGCTTCTAGTGTGGGCTTGCGCGG 208047 29 100.0 32 ............................. TATTGTTCAATAACTTCGGCAGCTTCGCGCCA 207986 29 100.0 32 ............................. GGCCGCCTGTGACGCGGTTACTCGCCCCATCC 207925 29 100.0 32 ............................. TGTATTGGATGTTTTTTTGGGTGCTGGGAGCG 207864 29 100.0 32 ............................. GCCATGTTGGATTGGATGTCTGGCGAGTTCGG 207803 29 100.0 32 ............................. TTGGTTTGGGATGAGGTTTCCATGCGATTTAT 207742 29 100.0 32 ............................. TCATCAGCCATCGTGATGTAGCGGAACATCAG 207681 29 100.0 32 ............................. CCCTCCTATTCACCGCCTGATTGTTTTTCCAT 207620 29 100.0 32 ............................. TTTCACCTGATTTTTGGACGGGGGGAGGGGCA 207559 29 100.0 32 ............................. CGACGATCAACCGGCCGATAGCCACGATTAAA 207498 29 89.7 0 .........................GG.A | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AAACCGGCCTGCGATTATTAGCGAGCCGAGTAGTTCA # Right flank : TAAATAAATCGGGCACGCGGTGTGATTACGCGTGCCCGATGTTGGACCGTCAGACAGCGTTAAAACGACTGCCAGTCGTCTGCGCTGGCTGAGGTTTTGGCGGCGGCGGGTTTTTTGAGTGCCAGTGTTTTCGCGGCCGGTGCCGATGAAGGGGAAATCATCGGTCGGTTGCCTGCCAGATTGTAAGACCCGCCTCTTGCTTCTTCGAGATGGAAAATACTGACCACCTGTTTTAACTGTTCAGCCTGCTGTTGCAGGGATTGCGTGGCGTTGTAGCCTTCTCTGACCAGCGAAGCATTTTGCAGTGTGGTTTGTTCCATTTTATTAATTGCCTGGTTGACCTGCTCGATACCCAGTGACTGCTCCTGACTGGCGACGCTGATTTCGCCGACCAGTTCACTGACTTTGCGCACGCCATCCACAATCCCCTGAATGGAGACCCCGGCTTTTTCCACCAGCCGGTTCCCGGCGTCCACCGTTTCTACCGAATGGCCGATCAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 607-48 **** Predicted by CRISPRDetect 2.4 *** >NZ_APMV01000008.1 Dickeya zeae DZ2Q Contig08, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 606 29 100.0 32 ............................. CCTGCATCCTGCGACTGTGCGTCGTTGGCATT 545 29 100.0 32 ............................. GTTTTTGCTCTCAGCATGTAATCAAAATCAGC 484 29 100.0 32 ............................. GCGTGGAAATGTCCAAAATAAATCTGAATGGA 423 29 100.0 32 ............................. ATGCAACGATCTCAAGAGATGAGCTGATTGGT 362 29 100.0 32 ............................. CGGGTCATTGCTGCGCATCCCTGCGCCCACTG 301 29 96.6 32 ............................A CAAAAAGTCGGTGGCGGTCGCCGCCCATTCCC 240 29 100.0 32 ............................. AGCACTTGCTCTACACGCCACTCATAAAAGCA 179 29 100.0 74 ............................. AGGTAAAATATCAAACCCCTCTTGTAGCGCGAGTGTTCCCCGCGCTGACTCTTTTCAGCACTGGAGTATAAAAC 76 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ========================================================================== ================== 9 29 99.6 37 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTTTAAAGCACGGCAGAAAATCGGTCAGTGTCGAAGGCTGGTTTTGTACCAGCCTTTCTTTTTGCAGTTTGCTCAGTTGCTTGATGCGGTATTCCCATTTCAGCGCCGTCGAGCGATCACCCGCCACACAGTGATACACCAGCGTCAACGGTCCTTTTCCGCGCAGTGAGCGTGCACCTTTGCCATTCTGATGCTCTGTCAGGCGTCTGTCGACATCGGTAGTAATGCCGGTATAAAGCCATCCGCTGCCAGTACGCAGCAGATAGACAAACCAGATAGTCTCACTGTTGTTCACGCCATTTCCTTTTCGTGGTTTAGCGCTTATTTTACGGTGACAAGCCGATAAAGGCTGCCTGTTTGACGGCATTCATCGGTGGACGTGGGTGAGGAAAATTGCGACCTTTATTTATCAATAAGTTAGCGCTCTTTAACAACGTGAAAAAGTTGGTGGAATTTTTCAGGCTTTAAAAATCATTAGAAAACAAGTATATACTTTTAGA # Right flank : GAACAGGACATGTGCGACATACTTAATATTGCAGTGTTCCCCGCGCCA # Questionable array : NO Score: 5.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.36, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //