Array 1 13027-10066 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIXCJ010000014.1 Salmonella enterica strain LB47 contig00014, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 13026 29 100.0 32 ............................. CCCCACAAATCACTGGTCGATTTCGTCGCACG 12965 29 100.0 32 ............................. GTTGCGACTAAACCGGACCAGCGCCCGCCCAC 12904 29 100.0 32 ............................. CCAGTGCTCGCTTGCTTCTACCCGTCCCGATC 12843 29 100.0 32 ............................. GCGGTTTTATTCGGCAGGGCATTGAATTTAAT 12782 29 100.0 32 ............................. AATTATCTATTTTTCTGGCCCGTTTTCAATGC 12721 29 100.0 32 ............................. CCCGCGTTTTGCGTCAGCATATAGCCAATATG 12660 29 100.0 32 ............................. GCTTTGCATACGTCACTCATAGACAAATCACG 12599 29 100.0 32 ............................. CGATTCTGGTAACGTCGCTGTACTGCCTGACA 12538 29 100.0 32 ............................. GGCGCATGAAACAACCGGCGGGGATCTCTATT 12477 29 100.0 32 ............................. ACAGCGTTAAAATGACGCCCGACGTTGTGGTG 12416 29 100.0 32 ............................. AGGGCTAACACATCACCATTATTACCAAATTC 12355 29 100.0 32 ............................. GACATTGCCCGCTGGGATGCGCGGCAACTGGA 12294 29 100.0 32 ............................. AATTGCCTTTGCTGCCCGGCTCTTCTACGGTC 12233 29 100.0 32 ............................. AGATGAATAACGCGATTTACGAGGTTACGTAT 12172 29 100.0 32 ............................. ATTAAATACCTGGAAAAATACCCCAAAGGGGC 12111 29 100.0 32 ............................. AAAAATAGCGATAACGCGCCAGATCGTGAGGT 12050 29 100.0 32 ............................. TCATTTTTTATTTTCACGTTCGGCTTTCTCAC 11989 29 100.0 32 ............................. TTAAATCGACCTACCTGTTAAACGCGTCAATG 11928 29 100.0 32 ............................. TTCGCAGTAACAGTGTCGTTTTTATAACCGAC 11867 29 100.0 32 ............................. GCGGCATTAATGCGGGATTGTGTTTTCTGAGC 11806 29 100.0 32 ............................. ACGGCAGAAACAATGGCGTCAGTAGCTCAGGA 11745 29 100.0 33 ............................. CAGTCAATGAGACTTTTCACACTGATAATGTTG 11683 29 100.0 32 ............................. CCCCTATTCCTGATCATCGCGCATTTGGCGGC 11622 29 100.0 32 ............................. ACCACCACGTAGCCGTAGGCTGTCGCCAGTTG 11561 29 100.0 32 ............................. GAATTACGTTGCGAACAGCGCGGCGAGAGACG 11500 29 100.0 32 ............................. CGGATTGCATTCAATAAACATGTAAATAGGAA 11439 29 100.0 32 ............................. TTACCGACACCTGCGTGGCTAGCGTTTTTTCG 11378 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 11317 29 100.0 32 ............................. CCTGCGTGCGTGCAACGGGTAACTAAGGGGAA 11256 29 100.0 32 ............................. CATTGGGTAATTATATTCGCAATTTAAGCGAT 11195 29 100.0 32 ............................. ATATTTTAAACCAGACTGACGCGATGATCGTT 11134 29 100.0 32 ............................. CCATCAAAGCTGCTGCGCTGGTGGCATAACCC 11073 29 100.0 32 ............................. ACTACGCGGCATGGCTGAACCCCGGATTCAAG 11012 29 100.0 32 ............................. CCCCAGGCGGTGCCTACGTCGGATGAAGAGCC 10951 29 100.0 32 ............................. CCGTGGAAAGAACCAGAGCGTTGGTTATTGGT 10890 29 100.0 32 ............................. CTCCCAAACCTCTACAGCGCTACCAACAGGAA 10829 29 100.0 33 ............................. GATCGCCCACCGGCATAAACGCGATAGCCGCGT 10767 29 100.0 32 ............................. CTGTTCCCGATCGCTTTATATCGGGGGCCATC 10706 29 100.0 32 ............................. TACCAGACGGACAGCTACGATACCGCTGACGA 10645 29 100.0 32 ............................. GCAGTACTGGCTCTAAATTTAAAACTGGTCAG 10584 29 100.0 32 ............................. TGGCCCACGTGCGCGGAGACGGCAACCGGTTC 10523 29 100.0 32 ............................. TCTCGACGCCAGATTTAATATTAATTCCCGCA 10462 29 100.0 32 ............................. CAGACGTAGAGATTGAGAACACAAATGACTCA 10401 29 100.0 32 ............................. GATTGCTCAGATTGGGAATTTGACCAGCGACC 10340 29 96.6 32 ........................G.... ACTATTTTTCAGGTGAATTACAGCGCCGCAAC 10279 29 100.0 33 ............................. GCGAAAAATTGACGCTATCAGGGAGAGCGCCGG 10217 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 10156 29 100.0 32 ............................. GCCGTGAACGCGTCGCCCGCTTTTTTGTAGCA 10095 29 96.6 0 ............T................ | A [10068] ========== ====== ====== ====== ============================= ================================= ================== 49 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCCTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGATTCGTGCCGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTTTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 30659-29286 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIXCJ010000014.1 Salmonella enterica strain LB47 contig00014, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 30658 29 100.0 32 ............................. ATTAAATTTTCGGGAACGGCGACGGAATCCGG 30597 29 100.0 32 ............................. AAAATCATCATGGCCAGCGCTGGCGCGCTCGC 30536 29 100.0 32 ............................. AATGATTATATCGATCGACCAATCGATGAGCA 30475 29 100.0 32 ............................. TCGGTGAGACAAATCATTCCAGATTGATCAAC 30414 29 100.0 32 ............................. AATTTAAACAGTAATTTAAAATTGTTAGCGTC 30353 29 100.0 33 ............................. GCAACGGCGGCGCGGCATTCTGCGGTGCAAATA 30291 29 100.0 32 ............................. GATTCCAGCGCGCCAAAATCAGGAGATTCCGT 30230 29 100.0 32 ............................. CCCCCGGCATTCGGCTATGCCTATTCATATGT 30169 29 100.0 32 ............................. TGGTCACTACCGTCTATCTCTTCCGGATACAC 30108 29 100.0 32 ............................. AACCCGGCAGCAGGGGTAATTCATACAGCATA 30047 29 100.0 32 ............................. ATTTGGTGAAGGGCGCATTTGAGGACCCGTTA 29986 29 96.6 32 ............T................ CTTGCAGCCGAATACGGTATAGAGTGGGACGG 29925 29 100.0 33 ............................. GCCTGTCCTGCGTCAGCGTTACCAGCTTCATGC 29863 29 100.0 32 ............................. AAATTCAATTACGACTCGCTGCCTGACGGGGT 29802 29 100.0 32 ............................. ATTTTGAGCGGACGGGAGCTGGCCGAATGACC 29741 29 100.0 33 ............................. CGGTTTTTACTTTTGCTGCATTCCGCCTCCCGG 29679 29 100.0 32 ............................. TCCTGGCAGGAATACAAACTTGTGATGCTGCG 29618 29 96.6 32 .............T............... ACCGCAGGCGCAGCGGCAATATTCTGGTTCAA 29557 29 96.6 32 .............T............... TCGTTTCTGGGAGCGGGTCTTTCCAGTATTGC 29496 29 96.6 32 ...........C................. CAGGGGAAGAGGTTCCGGCCCAGCAGTTCTAT 29435 29 100.0 32 ............................. CTGCTGGGTCGTGTTTGACTCAACGCTCCCCA 29374 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 29313 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 23 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCACTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //