Array 1 134607-138303 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKHY01000003.1 Trueperella bernardiae strain UMB0116 .16933_8_48.3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 134607 29 100.0 32 ............................. GTTGGTGGCGTCTTTTAAGCAGTGGAAGAAAT 134668 29 100.0 32 ............................. TCTATGGACGACCGTGGGGTGTATGAGGCTCT 134729 29 100.0 32 ............................. GTGAGGCACCAGCATGGAAAGGTTCCCAGCCT 134790 29 100.0 32 ............................. AGCCCGCAAGGGGCGGAGGCCCTAATCGAGCA 134851 29 100.0 32 ............................. TTGAAAGGAAGTGCGTCATGGCTGACTTTATC 134912 29 100.0 32 ............................. GATCTTGCGGGGTGTGAGGATGTGGCGCGGTG 134973 29 100.0 32 ............................. TATAGGGGGTATATATATGGTCGGGTCGGGTC 135034 29 100.0 32 ............................. AGGAGCAGGGCAATGTTTCGAGTAGCAATTAG 135095 29 100.0 32 ............................. GCCCTGAGAACAGGTCCGCTTGTCCCCCCCCT 135156 29 100.0 32 ............................. GTAGTGGTGTTGAATCTAGCCAAGTCGAGACC 135217 29 100.0 32 ............................. GATAATGCACTGGCGCGGATGCGACTCCACAC 135278 29 100.0 32 ............................. CAGCTCCCATGTTGTGATGCCGAGGGTGTGGG 135339 29 100.0 32 ............................. AAGGATCGCCCACGTGGTGGTGGTATTCGTCC 135400 29 100.0 33 ............................. ATGATCAGTTCTCCTCAATTACTTCGAATTCGG 135462 29 100.0 32 ............................. ACAGAGGCTACCACACGTCAGGGTCACGGCGG 135523 29 100.0 32 ............................. GGGAAAGGGGGAGGGGATACCCCCGGCCACCC 135584 29 100.0 32 ............................. GTTGCCGTGCGCTCCACGATGCCGTTCTTCAC 135645 29 100.0 32 ............................. CGCACCGTCTACCAAACACTGCAAACCGAGAA 135706 29 100.0 33 ............................. GGGGCAGCCTGACTTGTTGCAGGTGGTTTCTAG 135768 29 100.0 32 ............................. TCCCAATTGTGGATCGTCTCGACCCGCGGCAC 135829 29 100.0 32 ............................. CTCCCCGAAGACGACAAGGCCGACACCGCACA 135890 29 100.0 32 ............................. GGGGTCTGAAGCGACGGAGTGGTCGCGAATAG 135951 29 100.0 32 ............................. GAACTCAACCTCCCGCTATGGGTTATCACCGC 136012 29 100.0 32 ............................. CGCTTCGCGTTAGGCGCTCTGACACTGTACGG 136073 29 100.0 32 ............................. AGGCGCTCCCTCGGTGGCCTGGTCGTCGAGGT G [136095] 136135 29 100.0 32 ............................. GTAACAAAGAGGATCCCGTCCTTGACATGGAA 136196 29 100.0 32 ............................. GATGCGCTGACCCTCGCACGAGACGGCGCGCT 136257 29 100.0 32 ............................. GATCAATCTCAATACGCAACTTTCGTTTCGTC 136318 29 100.0 32 ............................. GTGCGTGAGCGCTCACGCTCTTGCGCTTGTGC 136379 29 100.0 32 ............................. CATGAGGGCATCTTTTCTTATTCCACGCCTAT 136440 29 100.0 32 ............................. TAGCTTGGCCTTCACGATCTGGAAGAATGACG 136501 29 100.0 32 ............................. AAGCCCCTCCGCCCCGTCCCGCAAAAACTGTC 136562 29 100.0 32 ............................. ACCGGCCCACAATTCTCCCACCCCAGGGCAAC 136623 29 100.0 32 ............................. CTCGTCGTCCCCCTCAACGTCATCAAAGGCGG 136684 29 100.0 32 ............................. GTCAGCTGTGTGTCTGGCAGGACCAGCCCGGG 136745 29 100.0 33 ............................. GCGTCCGCCTCTTTACTTTGGTGCTAGTGCTCA 136807 29 100.0 32 ............................. GGCCTTTAGGGAGCGTGGCGCCCTCGTTCTTC 136868 29 100.0 32 ............................. GTGGACGACAAGATCCGTGACCGGGACACAAT 136929 29 100.0 34 ............................. AGGGCAAGGCCAATGTGAACCGCCACGTCGAACA 136992 29 100.0 32 ............................. AGCCCCAGGGCCAGAGATCACCCACGGAATAG 137053 29 100.0 32 ............................. AGTGCCATCGCATCCAGCGACCAGTTCGACGC 137114 29 100.0 32 ............................. ACTCATGATTAGCCTGCAAGACCAGCTCGACG 137175 29 100.0 32 ............................. ATCTTGCACGAGCGGCTACGCGGCATCTCGCT 137236 29 100.0 33 ............................. GTTCCTCCCGGTGATTGCCATGTCTACTGCCCG 137298 29 100.0 32 ............................. GGCTGTTTTTAATGGTGACTCCCTGATTCACT 137359 29 100.0 32 ............................. AGGGCAGGGTGGTCGTACTCGTACCACGAGGA 137420 29 100.0 32 ............................. CTGGGCATCAGCCCTCGCCCACTCCACCTACA 137481 29 100.0 32 ............................. AGCTGGGTGAGGCGCCGGCCCTTGATGAGCCG 137542 29 100.0 32 ............................. ACCCTCTGCCTCCGCTCCACCACCACCGCACC 137603 29 100.0 32 ............................. CTAATCACCTACATCCAACGCTTCTTCGGCCA 137664 29 100.0 32 ............................. CACAGGAGCCAAACCGCCGGAATCCATACCAC 137725 29 100.0 32 ............................. CGTGAGTTTATGGACGTCGAGTGCGGAGATAG 137786 29 100.0 32 ............................. GGGTAGGCCGCCGCACATACCTCACCGCCACC 137847 29 100.0 33 ............................. GGTATGAGCCGCGTCTCGATCGACACGTGCGCA 137909 29 100.0 32 ............................. AACTTCATCACACTCATCACTGGCGACCGCGG 137970 29 100.0 32 ............................. ACTAAGCGGGATCCATAGGTCAAGGTCGGACA 138031 29 100.0 32 ............................. GGTGGTAGCCGTGTCATTGTCCGGGGCGTTGG 138092 29 100.0 32 ............................. CCACCTATAAGGGAGAGCGCCCGCGCCCACTG 138153 29 96.6 32 A............................ TGGGTTGGGTGCTCGCTGGGCTGGTGCTGATC 138214 29 100.0 32 ............................. CAAGAGCGGGGCGTTTTGGGTATTGGCGCGGG 138275 29 96.6 0 ...........................G. | ========== ====== ====== ====== ============================= ================================== ================== 61 29 99.9 32 CTCTTCCCCGCGCGAGCGGGGGTAATTCC # Left flank : GGGATGCTGGCCACGCTCATGGAAATCCTCTCGCCCCACCTTCCAAGCCGCGACGACGACCGGCTGATCGGCGGGAGAAACCACGAGGTAGCCGGTCACACGCAGTACGGGGCCGACTAGTGTTCATCGTTATCACCGCGACCTCCATCCCAGATCACCTCCACGGCTACCTCAGCCGATTCCTGTCAGAGGTGGACGTAGGCACGTACGTTGGCAAGGTGTCGCCCGTGGTGAGGGACAACCTCGTCGGCCGCTGCCGCGAAGGAGCCGGGGAGGGACGAATCGTCGCGATTAGTAGCGACACGGCGATGGAGCAAGGCTTCAGCGTCCAGACATTCGGCGAACCCACCCGTATGATTATGGACATGGATGGGATTCTTTTGAGCTCCACCGTGACCGGCGTGCTTGACGACGACGGCTCGCAGTCCGAGCCGCCCATTCTGGACCGGGAAAACGGGTCAAAGGGAGGCCTGCTTCAGTAAAACCACAGGTGGGATGGT # Right flank : CACCTCGAAATATCTCGATATCGAGGTGGGATCTATTTGGCGAAGCGACTTCCAAAAATTGTCGGAGGCGGGAAGTACGCTGGCACCAACAGACAACGACAAGGAGGTTGTGCCATGGTAGTCGGTTACCGGGCGATCATGCGGTTGCAGGACGGCGAGGATGCCGTGACTGTAGCTGAGGAGCAGTTGCATCGCTGGTTGGACAAGAAGACGAAGGGACGGAACCAAACGCGGGTCCGTGCTGATTGGAAGGGCACAGGCGCCCACCAGCTGGGGCAAAACTCCACGTTGAGGGTCTATCATCACGCAGACGATGCCGATTCAAGCCGACGAGGGTTCTACCGGCTCACCAAGGAGAACGAGAACGGCAAGTTTACGGTGTCGCTCTACGCGGCGAGCCTGCCTCGGATCCGCGAATACCGCCAGACAATCGTGGCCGAAACAGCTTGGGAGCCGCCGGAGCACAGTGGAAAACTGCCAAAACGTCAGACGGGATCAGG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTCCCCGCGCGAGCGGGGGTAATTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA //