Array 1 33355-30520 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACAWL010000127.1 Aggregatibacter actinomycetemcomitans strain SL7464 2530, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ======================================================================= ================== 33354 33 97.0 34 ................................T CCTTCCAATAGGCAGAGAAGCATTTTACCCGCAG 33287 33 97.0 33 ................................T TTTTCATCATCGCCCTTACCATCACCTTTACCA 33221 33 97.0 33 ................................C ATCTAAACAGAGTTGAGCATTAATTCTTATTAA 33155 33 100.0 34 ................................. GATCCCTACCACCGGAAGTACAAGCGGAGCTTTT 33088 33 97.0 34 ................................T CGGTTGTTTTGTTAGTGTTGATTAGTAAGTTTTG 33021 33 100.0 34 ................................. AACAGATCCCAAGCATAAGCGTTTTCTTTTGCGA 32954 33 97.0 35 ................................T CAATTCCTGCCATAATACCACGAATCATTAAATCA 32886 33 100.0 32 ................................. AAATTAAAAGCAAAAGAAAATGATAATAATAT 32821 33 100.0 33 ................................. TCTTGATATTTTAAAGGTGTTTTTAAATTCAAA 32755 33 100.0 34 ................................. TTGTAGATAATGTAATCTACAATGAACATCGCAC 32688 33 100.0 34 ................................. AATATAACCTTTCTATCTGAAAAAATAGCACTCC 32621 33 97.0 33 ................................T AAATCCAGCATAATTACCAATTGTTTAATTAAA 32555 33 100.0 34 ................................. AAGATGAGTTTAATTGATCTAACATTTATTGATT 32488 33 97.0 33 ................................T GATATTTAATTCCGCAATAGATTTTGGAATCAT 32422 33 100.0 34 ................................. AAGCGTTTTACTTTGGTACAAACGTTTATATGAA 32355 33 97.0 33 ................................C TTTGCTGTTAGCTTAGAATGACATGTTGCGGAA 32289 33 97.0 33 ................................T TCATCAGTTAAAATTTGGTCAGGATTATAAGGC 32223 33 100.0 33 ................................. ACAATAATAGATACATTTTTATTAGAAGTTTTA 32157 33 100.0 34 ................................. TTTAATATTCGCAGTTTATCAAAATCATAATCAG 32090 33 97.0 34 ................................G TTTACTAAATCAAGATCATTACCTCCTTTAGAGG 32023 33 97.0 32 ................................T CCTTGGCTTTTACCAATTCAAACTGAAAGTAA 31958 33 100.0 33 ................................. TTATTTTTAGTAAGCTTAGATACTTTAATAGCT 31892 33 100.0 33 ................................. AAATGAAAAATACGCCTGACATGTTGATATGTC 31826 33 97.0 33 ................................C GTTTAAAACACCATCCTTTAATAACATCATTTC 31760 33 100.0 34 ................................. TCTACAATAAGTAAATCAATGTATCCAAAATGAG 31693 33 100.0 32 ................................. TAACCCGCCCCCTGTAGGTATTCAATCATACG 31628 33 97.0 35 ................................T TCGCATTAGGAAATGTCAATATTGACCGCACAGAA 31560 33 97.0 33 ................................T TCGTACTCATTACTTCCTTCCTTTTTATATTCG 31494 33 97.0 34 ................................C TTATTCCGTTCAATCCTTGCCTCAAGATGAATAA 31427 33 100.0 71 ................................. ATTTACACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTACATTAATC 31323 33 97.0 35 ................................C CGGCTATTTACCTTATTGATTCAAGAAAAAGGCTA 31255 33 97.0 33 ................................C CACATTAAAAATCTTGTCCCAATTTACCCACAA 31189 33 100.0 33 ................................. AGTGTTTTAACATAAGAACGTAGAGAATTTAAA 31123 33 100.0 71 ................................. ATTTACACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTACATTAATC 31019 33 97.0 34 ................................T GTGGAGGATAAGGATAGGCATGACGGCCAATCAA 30952 33 100.0 33 ................................. CCTAGCAATAGTTTTGATGAAAATTCTTTGCCT 30886 33 97.0 34 ................................C CCATCACGAGTTAAAGCCATGCCGCAGTGTGTGC 30819 33 100.0 34 ................................. TCCGTATCATATAAACAAAGAATAATGCTCGAAG 30752 33 100.0 34 ................................. TATAATTCTGCACTATTTTTCCTATAATTTCCAA 30685 33 93.9 34 .................A..............C GAGATAGTTTCAAAATCCATAGCTGTTACCTTTA 30618 33 87.9 33 ..G....T....G....A............... GATGGTGTACTAAACCTGATGTAATGCTAGTAT 30552 33 81.8 0 ............G....A..A....C.....TT | ========== ====== ====== ====== ================================= ======================================================================= ================== 42 33 97.8 35 GCAGCCACCTTCAGGTGGCTGTGTGTTGAAACA # Left flank : TTGATGAGGTGAAAAATGTTAATGTTGATTACCTATGATATTTCTTTAGGAGACTCAGAGGGGCAAGCCAGGTTGCGCCGTATTGCGAAGCATTGCTTGGATTATGGCGTACGGGCGCAGTATTCGGTGTTTGAATGTGATGTAACGCCGGATCAATGGGTAAAATTGAAGGCTAAGCTACTAGCGACTTATGATCCGGATTGTGATAGTTTGCGCTTTTACCATCTAGGCAGCAAATGGCGGCGCAAAGTGGAGCATCACGGGGCGAAGCCGGCGGTGGATGTGTTTAAAGATGTGCTTGTTGTCTAGCTCGCTAACCCCTGGTTCTCATCAAATTCCTGCTGAGCTAGCGATCCTTGTTTTCTTTAACAATTTGGAATAGTTAATTCATTTGTATAACGACGATATGCCCGTTATACTTATTCCACTCTCTATTTTGAAATAAGTTAGCGAAATACAGTAAGTAATCTACTGATTTTTCTTATTTTTTCATATAGGGT # Right flank : ACTTGGTATACGCTTTTTATGAGCATTTAATTGGTTAAAAATATATGAGCTTGTTGCCTAATGGTAGGGCAGCGTTTAACAAAACGCTCTGTGCGAGTTCGATACTCGCCAAGCTCACTATTTATTGCCCTGCACAATTTTATACAATCCTTTCTCAATTTTATTCAACATACGGGTAATCTCCAAAAAAACACCTCTAAAATCGACCGCACTTTTCCCCATAAATAAAAAAGCTGAATCTCTCTCGAAATCCAGCTTTTCTTTTACCTATTTATTACGCTAATTCAGCACGTAATTTTTTCGTAACGTCAACCATGACTTTCAGTTGTTCTAGGGTTTCTTTCCACCCGCGGGTTTTTAGACCGCAGTCCGGGTTGACCCATAAGCGTTCTTTCGGTACTACTTGAAGCGCTTTGCGTAGCAAGTGTTCGATTTCGGCGGCGGTTGGCACGCGTGGGCTATGGATATCGTACACGCCCGGGCCGATGTCGTTCGGGTAT # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.11, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCACCTTCAGGTGGCTGTGTGTTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.70,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 3656-2787 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACAWL010000158.1 Aggregatibacter actinomycetemcomitans strain SL7464 2561, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3655 28 100.0 32 ............................ TGCTTGATACGCAATTTTTCTTTTTTTTCCTC 3595 28 96.4 32 ...............A............ AAAGTAAAACGGTGATGTCGTTTTCTGTCATC 3535 28 100.0 32 ............................ GCGTGTGTACATAGAGGTAGGTAACAACATAA 3475 28 100.0 33 ............................ CCGTTGCCATACCCCACAATGCTTTCCATTTAA 3414 28 100.0 32 ............................ TCTATATCAATTCCTGATGTGTCTAAATCATG 3354 28 100.0 32 ............................ TTTAAACTGTGCTTTGTCAGGAATAACAATGA 3294 28 100.0 32 ............................ TTATACACAACGTTGTTTATAGATTGGGATCC 3234 28 100.0 32 ............................ ATATTAGTTGAATATAACGCCCTTAACGTTTA 3174 28 100.0 32 ............................ ATGTAAGAGTAAATAAACATGAGAAATAAAGA 3114 28 100.0 32 ............................ GCGTGCGGTTCGTATGAGGAAGCCAGTGATAA 3054 28 100.0 32 ............................ GTGGCGGAGTTGGTCTATCGAGTTAATGATGA 2994 28 100.0 32 ............................ ATGTTTTTTTGGCACCGGTGCCAATTGTCACC 2934 28 100.0 32 ............................ ATACGCGCGAGCCATAAGCATAGAGCGCCGCT 2874 28 100.0 32 ............................ TTACAAAACAAGGACTTGGGACATTCGTAAGT 2814 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 15 28 99.8 32 CTTCACTGCCGAATAGGCAGCTTAGAAA # Left flank : GCACCAGAAATGATG # Right flank : CAAAAGCCGACCCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGATTAATCTGCTCTTCACTGCCGAATAGGCAGCTTAGAAACAGAAAATCATTTTACGCTCGCTAATTACTGCCTTCACTGCCGAATAGGCAGCTTAGAAAAAAATGATAACATGTTCAATATTTCCGCTCATCTTCACTGCCGAATAGGCAGCTTAGAAATGCATTTTCAATGTTGTGTGAAAGTACACCTTCTTCACTGCCGAATAGGCAGCTTAGAAATGAGGGTAATGTTCCTTTTACAATGATGTGTACTTCACTGCCGAATAGGCAGCTTAGAAATAATTATTGGCTATGTATGTTTAAAACTAAAGCTTCACTGCCGAATAGGCAGCTTAGAAATGTTATCCCACACATATATGTCACTTGCAATGCTTCACTGCCGAATAGGCAGCTTAGAAAAAAAAGAGCCATGATTGTCTATATAGAAAAGAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched CTTCACTGCCGAATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [11.7-15.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2191-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACAWL010000067.1 Aggregatibacter actinomycetemcomitans strain SL7464 2425, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2190 28 100.0 32 ............................ AATTTTCAAAAGCTTCTTTTGTTACTTTTTTA 2130 28 100.0 32 ............................ AGCTCCAGCGGCGAATCCGTTCCCAAGTGCTC 2070 28 100.0 32 ............................ ACAGAGTATTGACTTAAGTCTAAATTTAATGC 2010 28 100.0 33 ............................ CAAGTGCTCAACCAGCTCCAGCGGCAAATCCGT 1949 28 100.0 32 ............................ GACAAAGCGGGATTTTTTTTGTTTGAAAAAAT 1889 28 100.0 32 ............................ TATATGGAATTGCGTGGGTAATCTTCAAAACT 1829 28 100.0 32 ............................ ATAACAATCGGATTTTCTCTATTGTTTTCTTC 1769 28 100.0 32 ............................ AGATATTTCACAAATTCAATTAGATTATGACA 1709 28 100.0 32 ............................ CACGTAATTCTATATAGGTATTTGTTCATCTT 1649 28 100.0 32 ............................ ATCACCGAAGAAGTTCTAAAAAATTTTGATGG 1589 28 100.0 33 ............................ CACTTGCCATTCAAAATTAAAAGCAAAAGAAAA 1528 28 100.0 32 ............................ TCTTATCCCGAAACGCACAAGTGTTGAAATAG 1468 28 100.0 32 ............................ AAAATGAGGTACCCCTTGTTGATTACAAGATT 1408 28 100.0 32 ............................ TATTAATGAACCTAATATTCCAAACGGTAAAA 1348 28 100.0 32 ............................ TTTGACTTTCTCAATTAAAAAATTTTTAGTTC 1288 28 100.0 32 ............................ CAAGACGTTTTTCAATATAGTGAATAGTAACT 1228 28 100.0 32 ............................ TTTCACAATTTCAGGCGATGAATTACGTACTA 1168 28 100.0 32 ............................ ATAAATAGCCGAAATTTGTTTGGCGGTGATAA 1108 28 100.0 32 ............................ TGATTTTAATGCACGTATGAAACGTTTGTTTA 1048 28 100.0 32 ............................ TTGAAAGCTATTGTGGGTCAATGGGAAAAAGA 988 28 100.0 32 ............................ ACATCTTGATTGCCGTAAGACGACCCCAATAT 928 28 100.0 32 ............................ ACAATAGAACGTTAGAAGACTCATTAAAACCT 868 28 100.0 33 ............................ CTTCAAACTGTCCTGTGAGCTTCTCTAAAACAA 807 28 100.0 32 ............................ AAATGAGCAGATGGCAACGGAACAGTCGCAAA 747 28 100.0 32 ............................ TACTATTAGAAAAATAACCACCAACACCTACT 687 28 100.0 32 ............................ TTAACAGAAGAACAACGCCATACGATAAGACA 627 28 100.0 32 ............................ ATCAATTGGGATGCTAATAACATGACGTAAAA 567 28 100.0 32 ............................ TCAATTGGGATGCTAATAACATGACGTAAAAA 507 28 100.0 32 ............................ GATTGAAGAAATAATTTGGGTCTGATATAGCC 447 28 100.0 33 ............................ TTCTTCTACGAGTATTTGCACAACATTTTTTAA 386 28 100.0 32 ............................ AGAAGGAGAAAATTCAGCATATGTGTCACTAA 326 28 100.0 32 ............................ TTTGGCAAATAACTTTGTAGGCTTGGGTGAGT 266 28 100.0 32 ............................ AACTTCACCTTTTATGAAAGATTCAATCACTG 206 28 100.0 32 ............................ AAATGCATTTGAAATATATTTAGAAAATAGCA 146 28 100.0 32 ............................ GATAAAAGAAGAATATTGCAATCTTTTAATTT 86 28 100.0 32 ............................ TATAATTTATTGCTATCCAAAATGATAACATG 26 26 92.9 0 ..........................-- | ========== ====== ====== ====== ============================ ================================= ================== 37 28 99.8 32 CTTCACTGCCGAATAGGCAGCTTAGAAA # Left flank : CGTAACGATGAAAACCCGGAAGTCACCGATCGTTTTGAACTCTTCATCGGCGGACGCGAAATCGGTAACGGCTTCTCAGAATTAAACGACGCCGAAGACCAAAACGACCGTTTCGACGCACAAGTCGCCGCCAAAGAGGCCGGTGATGACGAAGCCATGTTTAAAGACGAAGACTTCGTGGTCGCACTCGAACACGGCTTACCGCCGACTGCCGGCGAAGGCTTAGGCATCGACCGCCTGGCAATGCTCTACGCCAACGCGCCGTCTATCCGTGATGTGATTTTATTCCCGGCAATGCGACAGAAGTAGTCAGCACAGCTATCAAGATAAAAGGAAGCCATTTGGCTTCCTTTTTAATTCCCCCTTATTTTACCCTTTATTTGCACAATAAAAAAATCCTTTAAAAAACAGTATACTAAAAACACAATCTATAAAAAGGATTTTCGCTTTCAAATACGCTAACAACTTGGTATATCAGCTATTTTCAGTTAGAATACCTA # Right flank : A # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched CTTCACTGCCGAATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 764-16 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACAWL010000022.1 Aggregatibacter actinomycetemcomitans strain SL7464 1112, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 763 28 100.0 32 ............................ ATTATCAACTATGAAAAAAACAGATTGATAAG 703 28 100.0 32 ............................ AACTCAAAAAAGCGTTTCAAGTGTTTTAATGT 643 28 100.0 32 ............................ TTGCGCATGCCGGCTTCCCAGAATTTTTCAAA 583 28 100.0 32 ............................ CAACCACGTGCTGATAATTTGCGCTTAAACAC 523 28 100.0 32 ............................ CACTGCACTGCCGATGGAGCCTAAAAGACTGC 463 28 100.0 32 ............................ TTAACGGTATATCTTGAAAAAAGTCGTGATGA 403 28 100.0 32 ............................ AAACTAAATATTGCAATTTAGCCCGCGCCAGC 343 28 100.0 32 ............................ TTTTATGCCGGTGGGTTATTATGCAAGTAATG 283 28 100.0 32 ............................ TGAATGAGCTTTAGTACGATGTGACGCCATGA 223 28 100.0 32 ............................ TGTAATTTCCTATAATTTTCTTTACTTTTCTT 163 28 100.0 32 ............................ ATTAAGAATTTGCGGGTGATTGTCAAGGTTTG 103 28 100.0 32 ............................ CTTGCTACCGCAAGGGCAAAACGCACTCCGAT 43 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 13 28 100.0 32 CTTCACTGCCGAATAGGCAGCTTAGAAA # Left flank : CATAATTATCAAAA # Right flank : ACAAAGTAAAATGCTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched CTTCACTGCCGAATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [18.3-20.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1155-105 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACAWL010000071.1 Aggregatibacter actinomycetemcomitans strain SL7464 2432, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1154 28 100.0 32 ............................ TTTACATGAGCTAACTCGCCATTGAACAGGAT 1094 28 100.0 32 ............................ ACATTAAGAGGTTTTAATTTAGGTTCATTACG 1034 28 100.0 32 ............................ TAATGTTTCATACAAGTTTAAAAAACGTTGCT 974 28 100.0 33 ............................ CGATAACATGACATAAAAAGAAACATTGCAATG 913 28 100.0 32 ............................ TGACTTTTTTCTTTAGAGTGTAAACCTCCAAT 853 28 100.0 32 ............................ TTAACAAAAGAACAACGCCATACGATAAGACA 793 28 100.0 32 ............................ TTCCGATTTGCTCATTTTTTATACTTTTCCTG 733 28 100.0 32 ............................ TTTTAATATTTGCGCAGGAGATTGGCGAGGGT 673 28 100.0 33 ............................ CAATAAGGTCATACAGTGCTGAATTACTTGCTG 612 28 100.0 32 ............................ AGGAACAAAAATCTCCGGTCCTCGCTCACCGA 552 28 100.0 32 ............................ TTCTTTTATTCAAAATTTCATGCAATTTATTC 492 28 100.0 32 ............................ AAAAAAGCCTTACCGATATGACACTGACCTAT 432 28 100.0 32 ............................ AATCGGAAAGCTGTTTAGGCTCTTCAAACGTT 372 28 100.0 32 ............................ CTAAACCCGGCACAAGTCCGCGAAACCAGTTG 312 28 100.0 32 ............................ ATATGATCGTGGCAATCGATCAGTTATTTAAT 252 28 100.0 32 ............................ CACATTATAGCCCCAGCCGGCATCCGTGGTAA 192 28 92.9 32 .C..............A........... GTGGAGTATAAAAGCATGCCGCCGCTTAATTT 132 28 78.6 0 .......A.TA.......GA....A... | ========== ====== ====== ====== ============================ ================================= ================== 18 28 98.4 32 CTTCACTGCCGAATAGGCAGCTTAGAAA # Left flank : TCAATACAAAACCT # Right flank : ATAATCTTCCCAAAAAAGTTAGACTAAACTCTAACAAGTTAAGGTACAGATTTTTTTATGACCTTGAATTGTCAAACCAAGTGCAACAATTTTTTAAAGTAAACT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched CTTCACTGCCGAATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //