Array 1 61182-60314 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_AERC01000011.1 Moraxella catarrhalis 7169 ctg00020, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence             	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	============================	================================	==================
     61181	    28	 100.0	    32	............................	TTACCGCTCCGAATATCCTTCACGACCGCACA	
     61121	    28	 100.0	    32	............................	TTTGGCATGAGCATCTGAGAAATACCGCCTAC	
     61061	    28	 100.0	    32	............................	ATTTTCACGGTTCTGCTGACGCAACGCTCCCC	
     61001	    28	 100.0	    32	............................	GAGCTTTGACAAGAAAGCAAGAGCAATTAACT	
     60941	    28	  96.4	    32	.......G....................	CAGTTGCATGGGAAGCGTTAACCAAGACTAAA	
     60881	    28	 100.0	    32	............................	ATGCTGTTATCGCGCTCATCTTTGGGCAAAGA	
     60821	    28	 100.0	    32	............................	GTCAAATCTTTTTGAGCTGATTAAACTTCAAA	
     60761	    28	 100.0	    32	............................	CTGCTAGTCGCATGAAAATTAACAGCAATGGC	
     60701	    28	 100.0	    32	............................	AAATCACGGATAGATGATGTATGACCATTCAC	
     60641	    28	 100.0	    32	............................	AGCTTGCAAATAAAGCAAGTACAGCGTCAGTT	
     60581	    28	 100.0	    32	............................	ATGCCTGACACCACACCGCCTGACTGCACTTT	
     60521	    28	  96.4	    32	..........A.................	TAGCACCGCCCAGCCGCCCACACACGCACATC	
     60461	    28	 100.0	    32	............................	ACATCATCGCCGACATTTTGCACGATGACAAG	
     60401	    28	 100.0	    32	............................	AAGCGATTAATCCGCTCACCAATTGTTCTGTT	
     60341	    28	  96.4	     0	..........A.................	|                               	
==========	======	======	======	============================	================================	==================
        15	    28	  99.3	    32	CTTCACGACCGCACAGGTCGCTTAGAAA	                                	       

# Left flank :   TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACTCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT
# Right flank :  TTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCTGCGCGTGCCAATGCCGAAAGCTATAACGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTAAAGGCATTCGCCTAACACATAAAGTACTGCTTAGCGTTCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATACA

# Questionable array : NO	 Score: 6.22
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     CTTCACGACCGCACAGGTCGCTTAGAAA
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [5,8] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-7.10,-7.40] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [2-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [71.7-81.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.92   Confidence: HIGH] 

# Array family : I-F [Matched known repeat from this family],   
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