Array 1 674481-676098 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009238.1 Basilea psittacipulmonis DSM 24701 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 674481 36 100.0 30 .................................... CGGACAGGACTACAGCAATTTAGAGGCGGT 674547 36 100.0 30 .................................... TTTTTGTGCTTGATTTGGCTAGCGTGTTGA 674613 36 100.0 30 .................................... CTTGCACCCGCCCCACCCTTGCACATAGTG 674679 36 100.0 30 .................................... ACTATCTATAATATGGTTATATGTTGTATT 674745 36 100.0 30 .................................... TTGCACGTGTAATAGTGATTATCAGGTGTG 674811 36 100.0 30 .................................... TGAGCTGGTTGGTAAAGGATTTACGCAAAG 674877 36 100.0 30 .................................... CTTATTTACAATGGTCAAGCAAACAATTTG 674943 36 100.0 30 .................................... AAGTCGATTATGCTCTCGCAGTTGTTGAGG 675009 36 100.0 30 .................................... AATATATACCAAAAGAAGAACGATTAATAA 675075 36 100.0 30 .................................... CGAAAATAAGAACAATTGTAACGAAAATAA 675141 36 100.0 30 .................................... TAGAATTGCTCAATCTAATAGGCGGATTAC 675207 36 100.0 30 .................................... CCACGTTACGCTTGCTGAAGTTGTCCATCT 675273 36 100.0 30 .................................... CAACGTTACCGTTTGTTCTTTACTTTTTTC 675339 36 100.0 30 .................................... GCAATGTATAAGTGCGCCCTACTAACGTAG 675405 36 100.0 30 .................................... AGGCTTCGTTTCTAAACAGAACGCCGTTTA 675471 36 100.0 30 .................................... CCAAACTGAGGACGGCTTTAAAACTCTAGA 675537 36 100.0 30 .................................... TGGACTGGCGGCAATGAAACCCGCCCTAAA 675603 36 100.0 30 .................................... AATCAGTCGTCGTCTCGTATTGACCGTTAG 675669 36 100.0 30 .................................... TGCTTAAAAGGGTTTTCCTCATATCGATGG 675735 36 100.0 30 .................................... TTTAACCGCTCTTCTTCTTTATAAAGGTCT 675801 36 100.0 29 .................................... TTCGTATCGTTCCACGCTCTATTTTTTTT 675866 36 100.0 30 .................................... CGAATTTATTCCGCTTCTCCCATTTAAGAT 675932 36 100.0 30 .................................... TACTATCTTTGACGGCTTGTGAGTCGCGTC 675998 36 100.0 30 .................................... GGATTAATTCCTAATGTTTTTTCGTGTTTA 676064 35 86.1 0 .............A.............GTA..-... | ========== ====== ====== ====== ==================================== ============================== ================== 25 36 99.4 30 ATTGTAGCATTACGAGATGAGAGAGGAAACTACAAC # Left flank : GTATTAGCAGCAATTGATAAAACCATTCAATCTTTTCAAGCTTCAATGATACATAAAGATTCTTCTTTGTTGAAATTGCCTGAAATGGTTTGTTTAAAAGAGCATGCATATGAGTGAGACAAGATTTATGAGAATGATAGTGTTTTTTGATTTGCCTGTAACAACGGCAGAAAAAAGAAAAGCGGCTGGTCAATTTAGAAATTTTTTAATCAAAGATGGTTATCAAATGTTGCAACTCTCGGTGTATGCTAGGATTGTTAGAGGAAGAGAAGCGTTGCAAAAACACCACATGCGATTAAAAAAAGCACTGCCAAAAGAGGGATCTATACGTTGTTTAGAAGTCACAGAAAAGCAATTTTCCAGTATGTTATTGCTTTTAGGGGAGGGAAAAGTTCAAGAAAAAAAGGTAAATATGAATCAATTATTATTGTTTTAAACAGTTTTTTTGAACTGATGAAATGGCTGTAATGCCTGATAAATCAAGCATTACAGCCGTCGGT # Right flank : CTGATGATTTGTTTAGTCCTAGAATTTGTTCACAATTAAAAAAAACGACTAGACTGAATCTAATCGGCAATATGAAAAAAGCCACTAGGCTAGTAGTGACTTCTTAATCGATTGTTTCTTCGTTCTCTAAATCTCGGATAACTTCCTCTGCGGTGAGGTCATAGTCTCCGCTGACCCGTTGATAAAAATACAGTGCGTTAGGGTTTGTTTTGAGGTCATGAATTAGTTCCGCAATCTCGGCTTTAGTAGGCAAGTCATCTTCCATTTCTCGCAATCTTGCATTTTCCTCAAGCTCTGCACGCATATCCTCTTGCCATGCTTCTAATGAATCATAGCCACAAAGCTTTGCACACTTTTGTTGTTCATCAATCGGCAAATCTAAAACGCTCATTAATCTACCTCCGTTATTTGAAAAATCAGTTTTTTTGAGTTCCCTTACCTGTGGATGACGTATTATCAGTGTTAGCTATTTTGGCTGTTCTTGATATGATGTTATCTTT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGTAGCATTACGAGATGAGAGAGGAAACTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 2 1271239-1272856 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009238.1 Basilea psittacipulmonis DSM 24701 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1271239 36 100.0 30 .................................... TTTACCGAAAGGCAAGGCGAAGAATAGAGT 1271305 36 100.0 30 .................................... CCGTTGTTTAAACTTCTTAACCCGTTCTTC 1271371 36 100.0 30 .................................... AAATCATAGGTATGATAAAAGAACCATAAT 1271437 36 100.0 30 .................................... CATGTTACAAATTATTAAACTTGTCTTCTA 1271503 36 100.0 30 .................................... TGAACCAACACTCACCTCAATAAACTCATA 1271569 36 100.0 30 .................................... AATACCCATCTTTCTAATTGATGGTCTCTT 1271635 36 100.0 30 .................................... TCATAGGCATAATAAGGTTCGAGCTTGCGA 1271701 36 100.0 29 .................................... CGGTAAGTTTACAAAAGTTTCCCCCCTTC 1271766 36 100.0 30 .................................... AACAAGCTCAAAGAAATGCATTTTGATTTC 1271832 36 100.0 30 .................................... AGAAGATATTTGTTTATACAAATTGATAGA 1271898 36 100.0 30 .................................... TAATCTGTATTTGTGACAAGCACAATTTCT 1271964 36 100.0 30 .................................... TTCTTTTTTTAGCTCTAGCCAGCCCTTCCC 1272030 36 100.0 30 .................................... ATTTAGCGTTGCCTGCTTCTAGAGACTCAA 1272096 36 100.0 30 .................................... CATATCGTCTTATGCCTGTACTTTTTTCTA 1272162 36 100.0 30 .................................... GAACCGATAAAGAACTTATAGAAACATACG 1272228 36 100.0 30 .................................... AGGTGGGTTATCTTAGTCGTCCAAGAATTG 1272294 36 100.0 30 .................................... ACAAATGTTATCTATATGAACCGATAAAGA 1272360 36 100.0 30 .................................... AGCATTTGGTGTAATACGATAGCGAGTACC 1272426 36 100.0 30 .................................... CATAAGGCTTGCCGATAATACAATAATCTT 1272492 36 100.0 30 .................................... CTGAGTAACTATATACTCTGTTGCCCCAAA 1272558 36 100.0 30 .................................... AATCGTAGGTAAGATATGGCGGAGCTTGCG 1272624 36 100.0 30 .................................... CAATTTTCATATCCTCCCAGTCTATATCTG 1272690 36 100.0 30 .................................... TATAGCTTGGATTCTTCGGAGTTTAGGGAT 1272756 36 100.0 30 .................................... CCAATATATTAGCGATAGATTCTGACGCAT 1272822 35 86.1 0 ...............CC.-..........T.A.... | ========== ====== ====== ====== ==================================== ============================== ================== 25 36 99.4 30 AGAATAGACTCCCTGATTGCAAAGGGATTCGGATAC # Left flank : TGAATACATTAGTGCTGATGCGAGAGGACATTACAAAGGACAAAAACAGATTTGGTTCTTACTACGATTTACAGGAAGTGATACGGACATTAATTTGCGTTCCACTAAACACCCTGAATTTGATGCTTGGCGTTGGCATAACTACAACGTTCCTTTGGACGTGGTGATTTCGTTCAAAAGAGAAGTATATACGTTGGCGTTGCAAGAATTGGAAAATTTGATCTATAAAACCAATCGCTTAATTTATCCTCGTCGTAGTTGGAAAGGTCCAAAACGTCAGCACTCACACCTACGTCGTCGAAATCATACGTGAGGAATTGACGTAGGAGTATATATTTGAGTGACATATAACTCAGTTGGCAATCGTTATTATTGCCAGCATTTGTTCTTAAAAAATTAGGATTTTTTTTGGAAAAGACAGTTTTTTTGTCAATAGATGTATTTTTTTATATAATGAAAACCCCTATGAACGCCTGTCCATGCGGTTTTGGTGGACAGGT # Right flank : CGTCTGCTACCAATATTACTGGCACATTAACACCCCGCCCCCACCCTGAAAAACCACAAATTTGCATTTCAAACCATTAGGTTTTGGTCAGGTTTAGAATACATTTCATACGTTGAACATAATTAACCGTTTTTAAGTTTTTCAGGAGACAAAAATGCTATTGCAGCTAATTTTTACAATATTTATATCTCCGATTTTTGAAATTATGATTTATGGGCTTCCTCATATTATTCTAGTGTTAATATTGCATTGTTTATTTAAACGGAGTAACTGATGAAAATCGAGCAAAAAGCGGTGGATGGCAAAGATGGAATTAGTCTTCATCTGACTTGGAAAGAGTTGACAGTGGGTGCGGTAGCAACGGTTTCATATGCGATATTTCCCAAGTTAACAACGGTGGTTTTGGGTGCTGCAGCGGTTTATTATGTGGCCGATAAAACGGGAATCTTGGGGAACAAAAAGCCTTGAGAAGCGATAAAAAACGTTTGAATGACACATGG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGAATAGACTCCCTGATTGCAAAGGGATTCGGATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.00,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //