Array 1 180972-182344 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQER010000006.1 Salmonella enterica strain LB23 contig00006, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 180972 29 100.0 32 ............................. ATTAAATTTTCGGGAACGGCGACGGAATCCGG 181033 29 100.0 32 ............................. AAAATCATCATGGCCAGCGCTGGCGCGCTCGC 181094 29 100.0 32 ............................. AATGATTATATCGATCGACCAATCGATGAGCA 181155 29 100.0 32 ............................. TCGGTGAGACAAATCATTCCAGATTGATCAAC 181216 29 100.0 32 ............................. AATTTAAACAGTAATTTAAAATTGTTAGCGTC 181277 29 100.0 33 ............................. GCAACGGCGGCGCGGCATTCTGCGGTGCAAATA 181339 29 100.0 32 ............................. GATTCCAGCGCGCCAAAATCAGGAGATTCCGT 181400 29 100.0 32 ............................. CCCCCGGCATTCGGCTATGCCTATTCATATGT 181461 29 100.0 32 ............................. TGGTCACTACCGTCTATCTCTTCCGGATACAC 181522 29 100.0 32 ............................. AACCCGGCAGCAGGGGTAATTCATACAGCATA 181583 29 100.0 32 ............................. ATTTGGTGAAGGGCGCATTTGAGGACCCGTTA 181644 29 96.6 32 ............T................ CTTGCAGCCGAATACGGTATAGAGTGGGACGG 181705 29 100.0 33 ............................. GCCTGTCCTGCGTCAGCGTTACCAGCTTCATGC 181767 29 100.0 32 ............................. AAATTCAATTACGACTCGCTGCCTGACGGGGT 181828 29 100.0 32 ............................. ATTTTGAGCGGACGGGAGCTGGCCGAATGACC 181889 29 100.0 33 ............................. CGGTTTTTACTTTTGCTGCATTCCGCCTCCCGG 181951 29 100.0 32 ............................. TCCTGGCAGGAATACAAACTTGTGATGCTGCG 182012 29 96.6 32 .............T............... ACCGCAGGCGCAGCGGCAATATTCTGGTTCAA 182073 29 96.6 32 .............T............... TCGTTTCTGGGAGCGGGTCTTTCCAGTATTGC 182134 29 96.6 32 ...........C................. CAGGGGAAGAGGTTCCGGCCCAGCAGTTCTAT 182195 29 100.0 32 ............................. CTGCTGGGTCGTGTTTGACTCAACGCTCCCCA 182256 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 182317 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 23 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCACTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 198604-201564 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQER010000006.1 Salmonella enterica strain LB23 contig00006, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 198604 29 100.0 32 ............................. CCCCACAAATCACTGGTCGATTTCGTCGCACG 198665 29 100.0 32 ............................. GTTGCGACTAAACCGGACCAGCGCCCGCCCAC 198726 29 100.0 32 ............................. CCAGTGCTCGCTTGCTTCTACCCGTCCCGATC 198787 29 100.0 32 ............................. GCGGTTTTATTCGGCAGGGCATTGAATTTAAT 198848 29 100.0 32 ............................. AATTATCTATTTTTCTGGCCCGTTTTCAATGC 198909 29 100.0 32 ............................. CCCGCGTTTTGCGTCAGCATATAGCCAATATG 198970 29 100.0 32 ............................. GCTTTGCATACGTCACTCATAGACAAATCACG 199031 29 100.0 32 ............................. CGATTCTGGTAACGTCGCTGTACTGCCTGACA 199092 29 100.0 32 ............................. GGCGCATGAAACAACCGGCGGGGATCTCTATT 199153 29 100.0 32 ............................. ACAGCGTTAAAATGACGCCCGACGTTGTGGTG 199214 29 100.0 32 ............................. AGGGCTAACACATCACCATTATTACCAAATTC 199275 29 100.0 32 ............................. GACATTGCCCGCTGGGATGCGCGGCAACTGGA 199336 29 100.0 32 ............................. AATTGCCTTTGCTGCCCGGCTCTTCTACGGTC 199397 29 100.0 32 ............................. AGATGAATAACGCGATTTACGAGGTTACGTAT 199458 29 100.0 32 ............................. ATTAAATACCTGGAAAAATACCCCAAAGGGGC 199519 29 100.0 32 ............................. AAAAATAGCGATAACGCGCCAGATCGTGAGGT 199580 29 100.0 32 ............................. TCATTTTTTATTTTCACGTTCGGCTTTCTCAC 199641 29 100.0 32 ............................. TTAAATCGACCTACCTGTTAAACGCGTCAATG 199702 29 100.0 32 ............................. TTCGCAGTAACAGTGTCGTTTTTATAACCGAC 199763 29 100.0 32 ............................. GCGGCATTAATGCGGGATTGTGTTTTCTGAGC 199824 29 100.0 32 ............................. ACGGCAGAAACAATGGCGTCAGTAGCTCAGGA 199885 29 100.0 33 ............................. CAGTCAATGAGACTTTTCACACTGATAATGTTG 199947 29 100.0 32 ............................. CCCCTATTCCTGATCATCGCGCATTTGGCGGC 200008 29 100.0 32 ............................. ACCACCACGTAGCCGTAGGCTGTCGCCAGTTG 200069 29 100.0 32 ............................. GAATTACGTTGCGAACAGCGCGGCGAGAGACG 200130 29 100.0 32 ............................. CGGATTGCATTCAATAAACATGTAAATAGGAA 200191 29 100.0 32 ............................. TTACCGACACCTGCGTGGCTAGCGTTTTTTCG 200252 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 200313 29 100.0 32 ............................. CCTGCGTGCGTGCAACGGGTAACTAAGGGGAA 200374 29 100.0 32 ............................. CATTGGGTAATTATATTCGCAATTTAAGCGAT 200435 29 100.0 32 ............................. ATATTTTAAACCAGACTGACGCGATGATCGTT 200496 29 100.0 32 ............................. CCATCAAAGCTGCTGCGCTGGTGGCATAACCC 200557 29 100.0 32 ............................. ACTACGCGGCATGGCTGAACCCCGGATTCAAG 200618 29 100.0 32 ............................. CCCCAGGCGGTGCCTACGTCGGATGAAGAGCC 200679 29 100.0 32 ............................. CCGTGGAAAGAACCAGAGCGTTGGTTATTGGT 200740 29 100.0 32 ............................. CTCCCAAACCTCTACAGCGCTACCAACAGGAA 200801 29 100.0 33 ............................. GATCGCCCACCGGCATAAACGCGATAGCCGCGT 200863 29 100.0 32 ............................. CTGTTCCCGATCGCTTTATATCGGGGGCCATC 200924 29 100.0 32 ............................. TACCAGACGGACAGCTACGATACCGCTGACGA 200985 29 100.0 32 ............................. GCAGTACTGGCTCTAAATTTAAAACTGGTCAG 201046 29 100.0 32 ............................. TGGCCCACGTGCGCGGAGACGGCAACCGGTTC 201107 29 100.0 32 ............................. TCTCGACGCCAGATTTAATATTAATTCCCGCA 201168 29 100.0 32 ............................. CAGACGTAGAGATTGAGAACACAAATGACTCA 201229 29 100.0 32 ............................. GATTGCTCAGATTGGGAATTTGACCAGCGACC 201290 29 96.6 32 ........................G.... ACTATTTTTCAGGTGAATTACAGCGCCGCAAC 201351 29 100.0 33 ............................. GCGAAAAATTGACGCTATCAGGGAGAGCGCCGG 201413 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 201474 29 100.0 32 ............................. GCCGTGAACGCGTCGCCCGCTTTTTTGTAGCA 201535 29 96.6 0 ............T................ | A [201562] ========== ====== ====== ====== ============================= ================================= ================== 49 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCCTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGATTCGTGCCGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTTTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //