Array 1 863553-866560 **** Predicted by CRISPRDetect 2.4 *** >NC_018410.1 Mycoplasma gallisepticum WI01_2001.043-13-2P, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 863553 36 100.0 30 .................................... AATCGAATAATTATGTTCAGATGTACTTTG 863619 36 100.0 30 .................................... GAAACGGCCGCAAGTTACTTACATACAATT 863685 36 100.0 30 .................................... TTTGCATATTTAGATCGTTACTTTGACAAA 863751 36 100.0 30 .................................... AATAAATTTAAAATTGCCGATTGTGTTCAA 863817 36 100.0 30 .................................... TTATAACAGATAATAACACTTGACGCGCTT 863883 36 100.0 30 .................................... TCAGATAATTCTTCAACTGCAACAACGTTA 863949 36 100.0 30 .................................... TTTATAACAACAGATTACGCTTTTTTATTC 864015 36 100.0 30 .................................... TTGGGCTAATTTACCGTATAAACTATTAAG 864081 36 100.0 30 .................................... AAAGCCCCGAACAACTAGCTTTCGAAAAGA 864147 36 100.0 30 .................................... ATTCATTAACAAAAAAGATGTTAAATAAAC 864213 36 100.0 30 .................................... TTTTTTCAAAATTATACAATAACGATTTAA 864279 36 100.0 30 .................................... CAGATTTTAAGAAAGAACGTTTAATTACAA 864345 36 100.0 30 .................................... GTAATACTCAAGAACTGCATCGCGCAAGTC 864411 36 100.0 30 .................................... AAGTAACTTGCAGCCGTTTCATGATCAAGT 864477 36 100.0 30 .................................... ATCTTGTTATTATTAGCGTTTATTTGGCCA 864543 36 100.0 30 .................................... TCTTGTGTCTTGAAACTTGCTATAAAAGTA 864609 36 100.0 30 .................................... TGATTAATAATAAAGTCAATCTTTCACATT 864675 36 100.0 30 .................................... AAATAAGGGATATCAAACGACATATTATGC 864741 36 100.0 30 .................................... AAAGTTGTATTGTGTTTGAACCATTTCACT 864807 36 100.0 30 .................................... AGGTTGTTCATGATTGACATTAAAATTAAA 864873 36 100.0 30 .................................... ATTCAATTGCGTTTTTTAAACGTACAAATA 864939 36 100.0 30 .................................... TTTGTTTTTATCTTGATTCGAAAGACATTA 865005 36 100.0 30 .................................... ATTCTGCCGCCACGATATCGATTTCAGTTC 865071 36 100.0 30 .................................... ATAAGAACAAGAACTATCTAACGCTTTTTT 865137 36 100.0 30 .................................... GTAAGTTGTCGATCTCTTCACTAACGACAG 865203 36 97.2 30 ......A............................. TTGTTGAGCTAATTGGACTTAAAGCAAATA 865269 36 100.0 30 .................................... TTGAAATTTGAATGTTTGGAAATCTTCACG 865335 36 100.0 31 .................................... GCAATAGTTTGTAAGCAAAACGTGGGAGGGG 865402 36 100.0 30 .................................... AATTAAAAGTTAAGAACGTTGTTGCTGACG 865468 36 100.0 30 .................................... TAGTGTATTTTAACCACCGTTCAAGCGCTC 865534 36 100.0 31 .................................... TTTTTTGTTAATGAATTAAAAATCTTATCAG 865601 36 100.0 30 .................................... TTTTTTAAGCTCATCTTCAAGGTGTTGATT 865667 36 100.0 30 .................................... AACTTATCTGCATAACCCTTTTGAATCTCT 865733 36 100.0 30 .................................... AAGTTGATCATTTAAATGAGCTTTTAAAAA 865799 36 100.0 30 .................................... ACGTTTGAGGTTCAGCTAATTCTGGGGTTA 865865 36 100.0 30 .................................... TTTGATCATCGACTGTTCAAAGAAGGCGTA 865931 36 100.0 30 .................................... TAGTTAAATTAATTTTTAAAGGATGGTTTA 865997 36 100.0 30 .................................... TAATAATCTTAATTTTAGTGTGTTTGTCGT 866063 36 100.0 30 .................................... GAATTAAATTATCTTTATAAGTAAAATAAA 866129 36 100.0 30 .................................... TAATAATCTTAATTTTAGTGTGTTTGTCGT 866195 36 100.0 30 .................................... GAATTAAATTATCTTTATAAGTAAAATAAA 866261 36 100.0 30 .................................... GTTTTGCTTATAAATTGTTACAAGACTTCT 866327 36 100.0 30 .................................... ATTCTGCCGCCACGATATCGATTTCTGTTC 866393 36 100.0 30 .................................... ATGGTGACGAATATAAACCCCAACTTGATC 866459 36 100.0 30 .................................... CAACAGCCGTTGTTAAAATTAAAAAAACTA 866525 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 46 36 99.9 30 GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC # Left flank : TTGATAAAGAAGTTGTTGCTAAACTTAATGAAACGTTAGGCCGTGATATTATCTCGTTAGATACTTCTTACTCTAAAATTCTGAAATCAATAATCAAGATTTCAGAAGATTATATAGATCATGAATTTATCTATTCATATCTGGAGTTATTACATTGATCAAAAGAAATTAAAACAATTATCCTTAAAGACTTTGATAATATCGATCTAAAAAGGTTGAGTAATTTAACTCAAACTACTAATCTAATTATTATGAAAAATGATATTATCTATGATCTTGAAAAACATTTTGAGTTTTTTGAGACATACTGCTTGATTGATCATGATTATGAAAATATGATTAAGATTGATAATATGCCTTCTTTTGAATATTTATTAGAAGATATTTTCAAAGTTATGGTTGATGAAGAGTTTAAGACCACAATGTCTTTTCATCAGCTAGAAATAATTAAAAAGGAATTAAAAAAGCACATTAATTAGCTTATTTTACTTGACAATGAG # Right flank : CAAAAACAAGTATTTTTTACAAACGAAAAAGTTTTATCATTAAACATATTTAATCTGAAACAAAATTTTGAAATAAATAAACTTTACTTAATCTTTTGTTTCATATTAAACAACATAATTCCAGTTGCTACTGAGACGTTTAAGGACTGTATCTTATCAGTATACATCGGGATCTTGATCTGGTAATCAGCATTCTTAATTAGTTGACTCGAAACTCCCTTTTGTTCGTTCCCAACAATTAGAATTGATTTATTAGCATAATCAACATTATAATCTTGAGCTTGATCACTTAAATTAGACACATAAGATCAAAAGCCATACTTATCTTGTAGATCCTTGATCGCATAAGATAAGTTGGCAACCTCAATTAGATTAAGATAAAAACATGCACCTAGTGATGTTTTTATCACCGTGTTGTTAATACTTGCTTGGTTGTCTTTTTTAAAGATGACCCCAAGCACATTTGCTGCCAAACAACTCCGTAAGATTCCACCAAAATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [78.3-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //