Array 1 60500-59495 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLUV01000022.1 Escherichia coli strain MOD1-EC5003 MOD1-EC5003_22_length_67081_cov_32.1281, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 60499 29 100.0 32 ............................. GCCGGGTTAAGAAGGTGTATGGATGGCCCGGA 60438 29 100.0 32 ............................. GGTTACGCCTGCACAGAGTACAATGCGTGGGG 60377 29 100.0 32 ............................. CGGTGGCAGTGATGAGGCGTTCCCAATTAATG 60316 29 100.0 32 ............................. CGGTGATGCGCGGTATCGATCAGCATCCGGCT 60255 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 60194 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 60133 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 60072 29 100.0 32 ............................. GGCACGGAATTGTTATGCTGTTCCCCTGACCG 60011 29 100.0 32 ............................. ATCGGACGATGGCGATCGCAATCGCGCGGGAA 59950 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 59889 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 59828 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 59767 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 59706 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 59645 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 59584 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 59523 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.4 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 48028-49216 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLUV01000026.1 Escherichia coli strain MOD1-EC5003 MOD1-EC5003_26_length_65929_cov_30.9771, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 48028 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 48089 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 48150 29 100.0 32 ............................. CCATGACTATAAAAGCTTATATTTTGATAAAT 48211 29 100.0 32 ............................. GCGTCTCGAGCGCCGGACGATTCAAAACCAGC 48272 29 96.6 32 ............................C AGGTCCTCGTCAGATACAGTAGTCACAACACC 48333 29 100.0 32 ............................. CACTGACAGTGAAGCTGAATTACAGGCAGAGG 48394 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 48455 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 48517 29 100.0 32 ............................. CAGTTGAAGCGCTTTAAAAAATTCTGGACGGC 48578 29 100.0 32 ............................. AGATCGACATGAGCCGCCGCGCGACGAATAAC 48639 29 100.0 32 ............................. TACCGATAATCGGTACAAGATAGTATTTACAT 48700 29 100.0 32 ............................. GACTATCGCGGGCTGCTGAAATCAACCGGCGA 48761 29 100.0 32 ............................. AGTCGAAATGAGGCGCGTGTTCTGGAGGATAT 48822 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 48883 29 100.0 32 ............................. ACGTGGTCATGGGTGCTGCTGTTGCAGAGCCA 48944 29 100.0 32 ............................. AGCAGATACACGGCTTTGTATTCCGTGCGCCC 49005 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 49066 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 49127 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 49188 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 20 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //