Array 1 3513517-3512878 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015229.1 Escherichia coli strain 06-00048 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3513516 29 100.0 32 ............................. GTGAGCCATTACAGCGTGTACAGGCAGTTACG 3513455 29 100.0 32 ............................. GCGATCAACAAGCTGGAACGGCAGTATTTAAA 3513394 29 100.0 32 ............................. GCCCGCGCGGGCTACATGACTATCCACTGCAA 3513333 29 100.0 32 ............................. ACGGGTAACAGTTCTGGTGGTGAGATAGCGGC 3513272 29 100.0 32 ............................. ACGAGGCTTTTTTTATTATTGTGGTTGTAAGT 3513211 29 100.0 32 ............................. ATGGCCCAGGGATTTGTTCAGTCCAGCGTGCC 3513150 29 100.0 32 ............................. GGTATGGGCGCGCGGCTCATTGCGTTTTCTAA 3513089 29 100.0 32 ............................. CTGTCTCCACGGTTCCCTTAACGTTACTTGCA 3513028 29 100.0 32 ............................. TGCGTAAATGTCTGATAGCGCCCTACCCCATA 3512967 29 100.0 32 ............................. GGGTGATTACCGTCGGCGGCTGGCTGGATTTG 3512906 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTATTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGTTGTTGATTATCAAGCCTTACATCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATACCGGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCTCGATCACGGGTTAATTTCCTGACAGCTTCCGGTGTATTTACGCCACTATTAAAATAAAGCTTATCGCCCACGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3539787-3538966 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015229.1 Escherichia coli strain 06-00048 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3539786 29 100.0 32 ............................. CCGCTGCGATTGTGGGCGCGAGGAGGTTTTAC 3539725 29 100.0 32 ............................. GACAGGATCTGGTCGTGATTAGCGGGAAAAGA 3539664 29 100.0 32 ............................. AAAACAAACCAGTATGCACTCATCTTTTCACC 3539603 29 100.0 32 ............................. GGCCTACAGTGCTGCCTACGAAGAAGCGTTTG 3539542 29 100.0 32 ............................. CAGCCCCCAGACCATTTATTGCAACGGGGTGT 3539481 29 100.0 32 ............................. CGCAAAAACCATTTTTTTCCAGCGCGATTTAA 3539420 29 100.0 32 ............................. TCGTTTGGCGACAAGCTTGATGAGATGCATAA 3539359 29 100.0 32 ............................. AGACCGAATACGATTCCTATTTCCGGCGCAAA 3539298 29 100.0 32 ............................. GCAAACAGCCAACCACCGCCGGGGCGGTTTCC 3539237 29 100.0 32 ............................. GAACAGCGCGACGCGTGGCTGTTGTGGCTGGG 3539176 29 100.0 32 ............................. CTCTCTGTTAGTCATTCTTCTTCCGCTCACTG 3539115 29 100.0 32 ............................. ATCACCTGATCTAATGTGCCTGCCTTCCGGTA 3539054 29 100.0 32 ............................. GCAAAAAATACGATCTCGCCGGTGTTTTCAGT 3538993 28 86.2 0 ............TT...........-..A | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.0 32 GAGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : TGGATGAATTGCTTGCGACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACTTGCATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATTACACATTTATATACGTTATAAATGGGTGGAACCTGTAAAGACTTCCACTCATTTATATTTTTTGTCGCCTCTGAAAACTCATCCATTTTGCCCATTCCGGACTAATCATTGTCATTCTCTACAAATTCTGTGGCGTTAATTTTTCTCTGGGGTGAAAATTATTACGTCGGAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTCAATCAATGGATTAAGTGCTCTTTAACATAATAGATGTGTTGTTTGTGTGATCCTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : TTTAGGTATGTTCAGGCCGGGCAGTTTTCCGCCCGGCCTACCTCATTCACGCATTCGACCAGCTCTGGATAGAATCCGCATTTCCCAGCTCACCATGCATCACTTCATACGATTTTTTCAGGATCACATCAGTGTGTTTGGTTAGGTCTTTGAAAATGCCTTTATTCATCGCGTCGTAGCGTTTGGCGTTGCTCTCAACAGGCATAAAGATATCTTTCACGCGAACCATTTTGTCGACAGCCGTTGCGTAATCCGGGTATAGCCCCAGACCTACCGCCGTATTAATCGCTGCCCCCAGGCTTGCACAACCATTAATGGCGTTACGGCGTGCCGGAAGGTTGAACACGTCGGCAAAAATCTGCATAAACAGATCGCTGTTCGAACCGCCGCCAGTAATGATCACATGCTTTGCAAAGTGATTCATTTCATTACACATATTGTCGTAATTGTTCTTCAGCGTCAGCGCCACGCTTTCCAGTATCGAACGATATATCCATGCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //