Array 1 70134-71017 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADOZS010000008.1 Citrobacter farmeri strain 1001295B_180824_H11 NODE_8_length_235783_cov_21.6739, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 70134 29 100.0 32 ............................. CGGCCATCGTCGTTAGTGCGCTTTATTCACTG 70195 29 100.0 32 ............................. GCCCCAATTACAACACTCACGATCTTGCTCAA 70256 29 96.6 32 A............................ AAACTGACTATACCTGACATAGAATCAAACTG 70317 29 100.0 32 ............................. CAGGATGCCTGACGATGATGCAGCACAAAAAA 70378 29 100.0 32 ............................. GTATTTCACCTGACGCCTCGGGGAACGTTAAT 70439 29 100.0 32 ............................. CACTTAGTGTCGGCCACACTCCGCGAGGCGCC 70500 29 100.0 32 ............................. ATAGCCAATTTTCTTGGAATATATGACTGAAA 70561 29 100.0 32 ............................. TACCCACCCCCAGGGACTTTACTGATTGCGTT 70622 29 100.0 32 ............................. CGCGTTGGGTTTATTGCAGATATAAAAAAGCC 70683 29 100.0 32 ............................. TAGAGAGATTGTAGCCGATTTAAACGGCAGCA 70744 29 100.0 32 ............................. GGACCAGCTCAGCGTGAATTTATACATCGCTA 70805 29 100.0 32 ............................. CCCGGAGTGACGGGGTCAGCGAAAAAAAAACA 70866 29 100.0 32 ............................. CCGTGGCGTAGTTTTCAACATTTGAGTGCCAG 70927 29 96.6 32 ...........A................. GTAAAATAAACCTCCCATATTGCGAGGATTTA 70988 29 89.7 0 A.........................TG. | G [71010] ========== ====== ====== ====== ============================= ================================ ================== 15 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GGTGCTAGCCGCCGGAGATATTGAGCCACCGCAGCCTGCGCCGGATATGTTACCTCCGGCGATACCTGAACCCAGTTCTATTGGTGATCAGGGACATCGGGGAAGTGGTGGATGAGTATGGTGGTAGTGGTTACGGAAAATGTCCCTCCGCGACTGCGGGGACGGTTGGCCGTCTGGTTGCTGGAGATCCGCGCGGGTGTTTATGTTGGCGACGTATCGAAACGCGTACGTGAAATGATCTGGCAGCAAATAGCACAACTTGGCGGGGAGGGAAATATCGCAATGGCCTGGGCAACAAATTCTGAATCTGGTTTTAAATTTCAGACTCTGGGCGTGAACCGCCGCATGCCGGTAGATTTAGATGGTCTACGACTGGTTTCTTTTCTTCCTGTTGAAAATCAATAGATTAAAAGCTCTTTAATATTGTGGATTTGTGGAATAATTGTTGGTGGATTGTTTCTTTGAGATAACTATTTGAAGGATAGGATTATTTTTTAAGT # Right flank : GACCATTCCAGTTGTGACTCAATTACAACCATACGTTCCCTGTTTCAGTAGGAATAAATCAAAATCGTGATGGTGTTCCTCATTGCATCAGATAAAAATCTGAAAATATTATCCCGTGCTGTTTTATTAATTTCTTTGTTTTACCCTTGGTGACGTTATTGCCGGAGGCAGTGACGTCAATATAAAACTGAGGGATTAAATAGATGAAAAAGACTTTTTTGGCTGCGGTGCTGACCCTGGTATCTGGTTCTTCTTTTGCAGCAATTACTGATACTTGCCAGCAATACTTTGATGATGTTGACGCGTTGATAGTTCAGGCATCAAAAACCAGCGATCAGGCTAAACAGCAGATGGAAGCCATGAAACCTCAACTTGAGGAGGCCAAGAAACAACTCGCAGAATTACCGGCTGAAAGTCAGGATGCTGGCTGCAAACAAGGCGCTGCCGCGCTGGTGCAAATGAAACAGTCTATGGGCATTAAATAATTTATTATAAGAAAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //