Array 1 5554-7046 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEWM01000005.1 Salmonella enterica isolate STY196, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5554 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 5615 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 5676 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 5737 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 5798 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 5859 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 5920 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 5981 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 6042 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 6103 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 6164 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 6225 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 6286 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 6347 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 6408 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 6469 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 6531 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 6592 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 6653 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 6714 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 6775 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 6836 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 6897 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 6958 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 7019 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 23178-25081 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEWM01000005.1 Salmonella enterica isolate STY196, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 23178 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 23239 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 23300 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 23361 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 23422 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 23483 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 23544 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 23606 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 23667 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 23728 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 23789 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 23850 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 23911 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 23972 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 24033 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 24094 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 24155 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 24216 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 24277 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 24338 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 24399 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 24461 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 24564 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 24625 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 24686 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 24747 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 24808 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 24869 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 24930 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 24991 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 25052 29 96.6 0 A............................ | A [25078] ========== ====== ====== ====== ============================= ========================================================================== ================== 31 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //