Array 1 1158822-1162755 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020100.1 Pseudomonas phragmitis strain S-6-2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1158822 29 100.0 32 ............................. GGCCGGGGCGTTTGCGCTGTCAGGGGCGTCCC 1158883 29 100.0 32 ............................. TTTCCCGCTGGCCTCGTGCGTCTCAATCGGCA 1158944 29 100.0 32 ............................. CCCGTACCACTGGACTTTGTCTTGGGTTTGAG 1159005 29 100.0 32 ............................. CGCGGGCTGACGAAAGCCTGTCACGAGGTAGT 1159066 29 100.0 32 ............................. ATATTGTGTTTGGTGTTGACGTGGCGCCATAG 1159127 29 100.0 32 ............................. TTGATTATTGGTTGCATGGGCGTGCCTGCATG 1159188 29 100.0 32 ............................. ACGGTCAACGACATTTTCACGATTGTCCGCGG 1159249 29 100.0 32 ............................. CTGCTGCGGGTATGGAGCTGGTTCGATCAGCA 1159310 29 100.0 32 ............................. GCACAGATGAGTCGCGCCATGCGCTCTCTGTT 1159371 29 100.0 32 ............................. TGGATGCAGCCACTGGGGGGGCAAGGCCAGGA 1159432 29 100.0 32 ............................. GGCATAGAGAAGATGCTCCAGCGGCGCGGAGT 1159493 29 100.0 32 ............................. AACGGCGTGGTGCGATCCGGGTGCATCGGAAT 1159554 29 100.0 32 ............................. CGATATTTCCAAACTGCGCAGTGACTTCACCG 1159615 29 100.0 32 ............................. CGCATCCTTTATTTCTTTGGCCAGATATTCAG 1159676 29 100.0 32 ............................. GCGCGCAGAATTGCCATCCCGGGCAACGAAAA 1159737 29 100.0 32 ............................. CCGTGAACGTCCCATACAGCTCATTACGGACA 1159798 29 100.0 32 ............................. ATCAGACCGTCATGCTTGAAAATAGCGAAGTG 1159859 29 100.0 32 ............................. TTGGCTGCGTGACAAGTATCGATGGCATCGAT 1159920 29 100.0 32 ............................. CTCTTCATCGGCTCGAACCATGCCGGCAGCAG 1159981 29 100.0 32 ............................. CCATGTTACGACACTGGTCCTCTTGGGCTGAT 1160042 29 100.0 32 ............................. CGCATCCTCGTAGCCATCCAGACCCGCGCTGA 1160103 29 100.0 32 ............................. CGGGTTTTTTGTGCCTGGAGAAAACATGGCAA 1160164 29 100.0 32 ............................. TACCGATGAAAAATTGCAGGTGACCGCCATGG 1160225 29 100.0 32 ............................. TTCTTTCTTTCCCACTCATACCAGAACTTCAA 1160286 29 100.0 32 ............................. AGGTGTTCATGCCGCACATGCTGCTGCCGAAC 1160347 29 100.0 32 ............................. ATCAGATGCTGGTTGCGCAGGCGCTTGGCAAC 1160408 29 100.0 32 ............................. GCCCGAGCAATGACTATCGCAACGAACCTTCG 1160469 29 100.0 32 ............................. AAGAACCAGGTTGCCGACAAGCAGCTCGTGCC 1160530 29 100.0 32 ............................. CCTCTTACGCCGCCAACCCAACCGATGCATGA 1160591 29 100.0 32 ............................. GGCGTGCGCCTAGCGCCGTTTGTTGCCCCCAT 1160652 29 100.0 32 ............................. CCGCTGTGCCCGCGCAGGGCAGCCCGCCTTAT 1160713 29 100.0 32 ............................. TCTTGCGTGAAGAGACTCGAGCTATTGGCGAT 1160774 29 100.0 32 ............................. CCACGGGAGTCGCTGAGCTTACGGGGTTTATC 1160835 29 100.0 32 ............................. CCAGTTGTTTGCCCCCTCCCCTGAGTCGAATT 1160896 29 100.0 32 ............................. TTCATCCGCGAGTCAAAGCAGTTCGAGGGGAG 1160957 29 96.6 32 ............................T GTCCGCAACCGTCCGCAATTTGATAAAAGGCC 1161018 29 96.6 32 ............................T GTGACGCCCTACGGCGCAACGTGCGCAGCTCA 1161079 29 100.0 32 ............................. CGGTACGGCGACTCAGAGGCGGCCTTGGTGAT 1161140 29 100.0 32 ............................. ATGATGGCTTCACCATCACAGTGAGCGAGTCG 1161201 29 100.0 32 ............................. CAGTTGAGCAGCAGAAAAGCGGGCGTTTTCCA 1161262 29 100.0 32 ............................. ATATCGGGGACAGCGCTAGCGACCCGTTCAAA 1161323 29 100.0 33 ............................. CTGCCCGAGGCGGCGGACGCAGGGTGCGCGGTC 1161385 29 100.0 32 ............................. TTGGAGTCATTTCCGAACCAGCCGGCATTCGG 1161446 29 100.0 32 ............................. AACCTGGTCAGGGCCTGGCCGGTGTCCATGAT 1161507 29 100.0 32 ............................. GAGATTCATCATGAACCTAGACCAAGAACTCA 1161568 29 96.6 31 ............................C CTGGCGGGTGTCTGCTCCAGTTCCAGGGAGA 1161628 29 100.0 32 ............................. GCATTCCGATGATGACGCCACTCGATACGGCA 1161689 29 100.0 32 ............................. GCCACTGGCCGGGTTGACGGCATTGTGGCGTC 1161750 29 100.0 32 ............................. CCAAATACCATCACAGCCCAGAAACTTCATAG 1161811 29 100.0 32 ............................. CGTCTGCATCGGTGCTGCTTTCAGGCATGGCC 1161872 29 100.0 32 ............................. GCCAGCACACGCCCGGCAATACACACCACCCG 1161933 29 100.0 32 ............................. CCGCAGACGCGGCCTAACCACAGCAAGCGAGG 1161994 29 100.0 32 ............................. GGCATGTGGACTGACGATGCTCGGGTAAAGAT 1162055 29 100.0 32 ............................. ACATCAGCAGCTTTCGCAGCCTGCGCACCGCC 1162116 29 100.0 32 ............................. TGGGAAGCCTTCAACAAGAGTAAGAGTAACGT 1162177 29 100.0 32 ............................. GCCGCGAAAATATCTTTAGTTACTTCATGCCA 1162238 29 100.0 32 ............................. CAATTAACGAAGCCTTTTGCCATGTGTCGGAT 1162299 29 100.0 32 ............................. GTGACCGGTTTCACATCGTGCGCCCTTGGCCG 1162360 29 100.0 32 ............................. TGGGTACTGATTACATCGTCACCCCTTACGGC 1162421 29 100.0 32 ............................. CCGCAAAAGGCGATTGCCGCCGACATGGACTA 1162482 29 96.6 33 ......................A...... CAACGCCACCGCACAACATCGAGCCTGGCCAGC 1162544 29 100.0 32 ............................. GGCAGCGTCCTGCATCCGCTGGTCTTGGCGAC 1162605 29 100.0 32 ............................. GGCAGCGTCCTGCATCCGCTGGTCTTGGCGAC 1162666 29 100.0 32 ............................. GGCAGCGTCCTGCATCCGCTGGTCTTGGCGAC 1162727 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 65 29 99.8 32 GTGTTCCCCGCACCTGCGGGGATGAACCG # Left flank : GCGAAAATCATTCCAACCATTGAAGAAGTGCTGGCATCAGGTGGCATTTCACCCCCAGAAGCGCCGCCGGAGTCTGTTCCACCTGCGATTCCCAACCCAGAAAGCCTTGGCGATGCCGGGCACCGGTCGCAGTAATGAGCTTTCTGGTTGTGGTCACAGAGAACGTGCCGCCACGCCTGCGTGGCCGAATGGCCATCTGGCTGCTGGAAGTTCGCGCAGGCGTGTATATCGGCAATGTCTCCAGACGTACCCGCGAAATGATCTGGCAGCAGCTAAGTGAAGGCCATGAAGATGGCAATGTGGTCATGGCTTGGTCGAGCAATCATGAATCCGGCTACGAGTTTCAAACGCTAGGGCCAAATCGGCGCCTGCCAGTTGAGTTCGATGGCTTGCATCTGGTCGCTTTCCACCCCCAGGAAAGCGATGATCTTTAACAAAATAATTTTGGTAGAATTTTAGAGGCCAATTTTTCCTATATGGAACAACTGGTTACTCTAAGT # Right flank : GCCAACGGCGAACTAAATGCCCAGCTTGCGAGCGTGTTCCCCGCACGGTCGGTCACTATGCGTCCTTTCCATGATGTATTGAGCGCGGTTGTTTCCAATTGGCAACGGTTAACTTCTTCTGAGGTTATTATCCGGTTCGATTCCGGCGCCGCGCACTCAGCACCCCTGTTTATACCGTCCTGACACTATCCACCCCCATATCCGCTGGTCAGTTCGCCCCCCGAAACCCGAGCCCTTGTTCGGCTTTTTTGATAGTGTGCGCACCGGCTTGTATGGCCGTCGTTTTCAATTCAAATTGTTTTAATAAACCTCTCCTATTCTCTATCCCGAGTATAAGAACTGGGAACTGATATCCCGGTTTGGGGTTCCTATGGGGGAATGCTCTGAAAAATGAGGTAGCTATGTCTTTGAAATTGCTCACTCTTTTTTCCGGTTTGGTGTTGCTTTCGCTGACAGCAGGGGCGAATGAGCGGACCGTGTACGGACTCAGTGAAACCGCT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACCTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCACCTGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //