Array 1 135320-136738 **** Predicted by CRISPRDetect 2.4 *** >NZ_FBMT01000026.1 Campylobacter coli isolate SWAN387, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 135320 36 100.0 30 .................................... CTTGCAGGGTGAAGACTATCAGGCTCTAAG 135386 36 100.0 30 .................................... CTAATATTTTATACATTTGTGTTCCGCCTC 135452 36 100.0 30 .................................... TTTGTATTGAGAAAAGTATAATTTTTACTT 135518 36 100.0 30 .................................... AACTGAAAGTTGATTTGCTGAGCTATCAAT 135584 36 100.0 30 .................................... ATTTCACTGCATTTCGGGCATTTTGAGTAA 135650 36 100.0 30 .................................... TAACGCCATCGGCTTGCTGTGTTTCATCTC 135716 36 100.0 30 .................................... TATCCCCGCTCTAAGACGGGGCAACTTATC 135782 36 100.0 30 .................................... CAGTTAGTCCTACTGATAGAGCTTAAAACT 135848 36 100.0 29 .................................... AGCAAGCAGAAAAGACACCAGTAATAACT 135913 36 100.0 29 .................................... ATTAAAACACTGCTTGACAACCCTTACAA 135978 36 100.0 29 .................................... TTAAGCAAAACACTATGCAATTTATTAAT 136043 36 100.0 30 .................................... AGAAAACAAAACTACCCTATGAATGAAATT 136109 36 100.0 30 .................................... TTTATTTCCTTAAGTATGAGTTTTTTAAAG 136175 36 100.0 30 .................................... CCTATCGTGAATACACAAATAGCACCATTT 136241 36 100.0 30 .................................... TAAAAAGTCGTTAATATCTTCTGGATTTAA 136307 36 100.0 30 .................................... TACAATTGGGCTGAGGAAATGTATCTCGCC 136373 36 100.0 30 .................................... TCCAGCAACTATTGCTTGTGATCTTTCAAT 136439 36 100.0 30 .................................... AAAATTCAAACCGCCATGACTATCCTTAGC 136505 36 100.0 30 .................................... AAAGAGCTTGTTAAAAACGATATCTATAAT 136571 36 100.0 30 .................................... CAATTGTAAATCGTTAATTTTTGAGGTATT 136637 36 100.0 30 .................................... TTTGATATGCTACATACCCCAATAGTAGTT 136703 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 22 36 100.0 30 GTTTTAGTCTCTTTTTAAATTTCTTTATGGTAAAAT # Left flank : AAGACCATTACAAGCTTCTTTTATATCTAATTCACAAGCTTTTTCATAGTATTGTTTAGCTTTAGAATAATTACCTTGTTTATGTTGTTCTTTTCCAAGATCAAAATAATTATCATTTGAATAAACGCAAACAGGTATTAAAGTAAATACAAATATGAAATATTTCATTACCATCAATTTTCCTTTTAAAGCTATATTATTTGAAATTTTTATATTCTTTACAATCATATTCATCTCCTAATTCACAAGATTTTTCATAATTAATTCTTGCTGTATGGCAATCTCTTTCGATGTACTTACACTTCTTTAATAAAATAACCATCGTTCGAAAATACATTTGTTGTTAATAAAATTAAGAACTAATATATTTAATTTTATTTGTTGCCTTTTATAATTAATTGTTAATTATAGCATAAATTATAATTTACAATTGATAATATGTTATGTAAAAATTAAAGTTTGAAAAAATTTATTTTTTCAAATTCCAAAAGCGACATATT # Right flank : TAGACTTTGAACAAATAAAGAAAAATAGAGCTTTTTGTATACAAAAATGTATAAAAATATGCTATCATTTTAAAAGAGAAATTTAAAAAGAGACTAAAATAAGTGGTTTTCGGTTAGCCACGCAGGGTTACAATCCCTTTAAAACCGTTAAAATTCAAACAAACTAGCTTGTCTAATTTTATTAGACTTAGTTTTGTTTTCTTTGTATATCTTGTCATTGCTGTATTTAAAATCTTGTGTTTTTTCATCATACTCAAAAAGAACTAAATTTTTATCATCATTCATTTTTTCATTAAAAGAAACTCCGCCTAAAAGTATTTGCATATTGTCAAATTGTTTTTCAGTTATGGTTAATACTCTTATATTGCCACAAGGGGGTAAAATTCTTTCTACGGATTTGATTGCTGTTTTAGCCGAAGTCATTCCTTTACAAATTTTAACATATACGCTAAATTGCATCATAAAAAAGCCAAGTTTTACAAGCGAAACTCTAAATTTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCTCTTTTTAAATTTCTTTATGGTAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.56%AT] # Reference repeat match prediction: F [matched GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [81.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //