Array 1 64326-60713 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZGQ01000002.1 Moraxella catarrhalis strain COPD_M133 NODE_2_length_348814_cov_38.1163, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 64325 28 100.0 32 ............................ CCAAATTTAAAGTTGCTAATTTGTCATTCATT 64265 28 100.0 32 ............................ TTTATCTGACTAACCTGTATATTTAATATACC 64205 28 100.0 32 ............................ AATAAATATGAGATTGGTGCAAACACCAGCGA 64145 28 100.0 32 ............................ ACTGTGCATGATATTGATATTTTGGAGATATG 64085 28 100.0 32 ............................ ATAACAGCAACAGGTACAACCGCCGATAAGAT 64025 28 100.0 32 ............................ ATCAGAATTGAACAAATTGTTGGTAAGCAAAA 63965 28 100.0 32 ............................ TTTGGCACTTGCCGCCGCTTGCTCTGGATTTT 63905 28 100.0 32 ............................ TTGAATGCATTGCCTAGGATGGTTCGCTCATC 63845 28 100.0 32 ............................ TAGAAAGCGTCCTAGCGTGCGTTATATTGCCG 63785 28 100.0 32 ............................ CACGGCTCTCATGAAAACACCGCTCCAGTCAT 63725 28 100.0 33 ............................ ATATTAGATGAAAAGCGATTGGCGGAGTTGGTG 63664 28 100.0 33 ............................ TTTGGCACTTGCCGCCGCTTGCTCTGGATTTTC 63603 28 100.0 32 ............................ GTAAACTTTACGCCCAATGTAGCGACTATTTT 63543 28 100.0 33 ............................ AGTATGGAATCGGCAACTACTCAGCTTGGCTAT 63482 28 100.0 32 ............................ ACAGGCAAGAATACTTATCATTTTGGGCATTG 63422 28 100.0 32 ............................ CAATCATTAATGCGTTGGCGGTGGCGTTTTTT 63362 28 100.0 32 ............................ AAAAACTGCAAGCACTTGGAATATTGATTTTC 63302 28 100.0 32 ............................ TTTATCACAATGCGTCAAACACAAGAAGCATT 63242 28 100.0 33 ............................ ATAAAAGTGCTGGTAATAGCGATGTAACAGCAG 63181 28 100.0 32 ............................ AAAAGCGTGCAAGTAGAATCTAATTTGCCCAA 63121 28 100.0 32 ............................ ATACATTGCCACCAATATCAGATAGACTTAAA 63061 28 100.0 32 ............................ TGTGCCAAGTCCTGGTACAAGCCCTGATACTT 63001 28 100.0 32 ............................ CATACAAAATTCATTAAAAATAAGCTCTTGTT 62941 28 100.0 32 ............................ TTTATTTTTCGATATTTTGTGCATTTTACACT 62881 28 100.0 33 ............................ GCCCAAGGGGTTTTTAGCACATACACGCCGTCA 62820 28 100.0 32 ............................ TTCGCCTGCGTTTTGACTTGCCTGTATTTTTG 62760 28 100.0 32 ............................ GCTCGGATAAGCTTTGGTTTGTCGTTGTTAGC 62700 28 100.0 32 ............................ AATGCTTGATACTGAATATTTTAGAGATTTTG 62640 28 100.0 33 ............................ ATGTTCTCAGTGATAACACGCCCAACATCGATC 62579 28 100.0 32 ............................ ACCGACCCGCTGTTGATATTACTTTTTCAGCA 62519 28 100.0 32 ............................ GCATTGAGCATTGATTTTTTCACGCACTTTAG 62459 28 100.0 32 ............................ TCTTCACTGGTACGAATAAACATCCAGCTATC 62399 28 100.0 32 ............................ AGTGATAGGGTATTTTCCTGCCACTTTCAAAT 62339 28 100.0 32 ............................ CAGTGTACCACCACCAGTTAGACCATTACCTG 62279 28 100.0 34 ............................ GCACAAGAGATTATTTTGGTTCCGCCAAGCTCTG 62217 28 100.0 32 ............................ AATAGATTTTTTAAAAGTTTATTGGTTGTTTT 62157 28 100.0 32 ............................ ACCCAACCCATAGCGTTCGGCAGTGCATAGGT 62097 28 100.0 32 ............................ TCTTGACCACAGTTTACGCACGCCGATTGGCA 62037 28 100.0 32 ............................ AAATTCCTTTAGTGCTTACCAATACAGCTATA 61977 28 100.0 32 ............................ AATTCACGGATTGATGAGGTATGAGACCCCAC 61917 28 100.0 8 ............................ TACTAACT Deletion [61882] 61878 25 89.3 5 .........................--- CTTAG Deletion [61854] 61856 28 100.0 32 ............................ TTTTATCATAATTACTTGTTATTTCTTATTAT 61796 28 96.4 32 ...................A........ CACTCAATGTATAACACCGTCCGCACCAGTGA 61736 28 100.0 32 ............................ ACTTGCCCAGTCTGTCCAATCGCTTGTATTGC 61676 28 100.0 32 ............................ CTGGCGGCTGGGAAGTTAAACAAACAGCTTAT 61616 28 100.0 32 ............................ TTCAGTTCTTTCACTTGATAATGAACCTGCTT 61556 28 100.0 32 ............................ TATATCCGCAGAGCTTTAGCAGATAATGGTAG 61496 28 100.0 32 ............................ ACGTGTGAAAAAGCGTGTCACTGCATCATAAA 61436 28 100.0 32 ............................ AACTTTTTAAAATACTGCTTGATGGATTCATC 61376 28 100.0 32 ............................ TACTTTAAATAATTGATTGTTCATAGTTTTAA 61316 28 100.0 32 ............................ TACTTTAAATAATTGATTGTTCATAGTTTTAA 61256 28 100.0 9 ............................ TTTTGCTGT Deletion [61220] 61219 28 100.0 32 ............................ AGTATTTGTATTGATTGATGGTGATTGAGTGC 61159 28 100.0 32 ............................ GTTGAGCTGTATCCTCTGATTCTCTTATTGAT 61099 28 100.0 32 ............................ ACTTGATTTAGTAGCTAAGCTTGATGTGTCAA 61039 28 100.0 32 ............................ GCCTTGGTGTTGTCAGTTTTTGAGCAGAACGA 60979 28 100.0 31 ............................ AAAAACCGTTGTGGATAAAATCGCTCCTCTA 60920 28 100.0 32 ............................ GAAAACATGGGCTTTTTATCGCCGTGCGGACT 60860 28 100.0 32 ............................ ATAATTAACAGTTGCACAACCAATCTTAAAGA 60800 28 100.0 32 ............................ ATTGACTGAATTTACCGCAGTTTCAATCGTTG 60740 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 62 28 99.8 31 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTCAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATTACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : TTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCCGCGCGTGCCAATGCCGAAAGCTATAATGCCCAACGCCGTATGGAACAAGAAACCGATAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTGAAGGTATTCGCCTAACACATAAAGTACTGCTTAGCGTTCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATACA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //