Array 1 2323-1685 **** Predicted by CRISPRDetect 2.4 *** >NZ_PEMF01000140.1 Thermus scotoductus strain 18_S18 NODE_226_length_2640_cov_44.8906_ID_451, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2322 29 100.0 32 ............................. CGCTGGGCCTCACACAAGAAGGCCTCGCCCGT 2261 29 100.0 32 ............................. GGAAGGGGTACATGGGGGCGGTGGTGGCCTGC 2200 29 100.0 32 ............................. AGGCCCCCTGTACCTCCACGGCAACCTTGCGC 2139 29 100.0 32 ............................. ACGCTGAACCAGCTCAGCCCCATCTGAAACAT 2078 29 100.0 31 ............................. GGTAGCCCGGTGCCCAATCCGCAGTTATCGA 2018 29 100.0 33 ............................. CCGCCGCCACGAACCCAGCAGCGAATCCCCACC 1956 29 100.0 31 ............................. ATGGGGAGTCCTGTGGTGTCTCTGAGCTTGC 1896 29 100.0 32 ............................. CTCCGGCGAAGCCTACCGGTATCGGAAAGCGT 1835 29 100.0 32 ............................. AGGGGGTCGCCGTCGTCGACCAGAGGGCCAAC 1774 29 100.0 32 ............................. AGTTGGGACCGCTTAACGCTCAATAATCCAGC 1713 29 82.8 0 ........G.T...G.C..C......... | ========== ====== ====== ====== ============================= ================================= ================== 11 29 98.4 32 GTAGTCCCCACACGCGTGGGGATGGCCCG # Left flank : CTTGCAGGGAGGTGGGCAGAACGGAAACTAAAGGGGTTCTCGGAGGTGAAGGAGGTGCTGGAGAAGATGCTTCAGGAGCGGTATGCCCCCCGTACACAGACTCTTACACATAACTCTTGACACGACCGGGGGTGCTCACGGTTTGGATGCATAGCACCCCCTTTTCTTTCACACCCTAGGGGTCCAGATCAAGTAGCACACGAAGGAATGGCATAGCCCGGTTCGCACGCGGGGATCTTGACAGTTAATCCTTAGACTGGCTCCCTTTATATACACATAGAGGGGGGTCAGCGGGGGTTTTTGCCGTCTGGATCATG # Right flank : GTAAGGGGAGCAGTGAAAAGGCTTTTGCGCAAGCGCTAGAGGGCAAGTAGCTTCTCGAGGGCCTTGAGGTAACGGCCCTGTCAAGGAGCCCTCCCCACCGGGTTTGGGGCCACTCTCCGCTTAGGGATGCGGGCTCAAGCCTAATACCCTCCCCGGGCTAAAGCACTGGGTGTGGTGCGCGAAAGCTACGTTTCGCGAAAAAGAGACCCTACTGCCCCGCCCTGCAGTTTCTTGGAAATTCATCGGTACTAGAAAGGGCGGAGAAGCCTTTCGGGCACCTACCCCTTCCCCAAGGACTGCGGCCCTCCCTTCAAAAGGAAGGGGTTCCTGCCGGTTATCCGGCAAGAAACCCAGGCGACCCGGGGCCGCTTACCGCCGCCTTCACTTCCGTCCTTCCCCAAGGGCCCATGCCGGTTCTTGAGGAGGACGCCCAGGCTGTAGACCCGCTTTCCCACCTTGACCACGAAGGCTTCCAGCCTGTCGCCCCGCCGCACCACGGG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACACGCGTGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTAGTCCCCACACGCGTGGGGATGGCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1591-3143 **** Predicted by CRISPRDetect 2.4 *** >NZ_PEMF01000028.1 Thermus scotoductus strain 18_S18 NODE_125_length_6323_cov_29.1217_ID_249, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1591 29 100.0 32 ............................. GACCCAGAGGAACCAGGTGGCCGGATTCATCT 1652 29 100.0 32 ............................. GGCCAGTATACTGGACGGCCTGCACTATCCCC 1713 29 100.0 31 ............................. CGCTCCCGTTCCCGCCCGCTAGCCGCCTCAA 1773 29 100.0 31 ............................. AGTAGGGCAATGGACTGGGTGCAAGCCATTA 1833 29 100.0 32 ............................. CACGGCGTGTTGATGCAGGTCAGGGGCGAATG 1894 29 100.0 31 ............................. CCACGACTTCCAGGTAGTCTACAAGGAGTGC 1954 29 100.0 32 ............................. ACGAGCTCGTCTTCCACCGGGACCCCGAGAAA 2015 29 96.6 32 ............................T TGGAAATAGCATCGAAGACGGCGCTTTGGTTC 2076 29 100.0 32 ............................. CACCCCCCGCAGGTGCGCTGCAGGGCGGCCCG 2137 29 100.0 33 ............................. GCGGGGCCTGGACCACCCACCCCGCCGCCATGC 2199 29 100.0 30 ............................. GAGGGAAGGCGTGGGTAAGCCAAAAATGCC 2258 29 100.0 31 ............................. GAGCCGGATCAGGCTCTTGGCGTAGTCCTCA 2318 29 100.0 33 ............................. CAGGACAGCGAGCCCCGTGAGCATGGCGAGAAC 2380 29 100.0 32 ............................. AGGGGGGTAGGTGAGGGAGGTAGACGCTCACC 2441 29 100.0 33 ............................. GAGCTTCAGGCGGAGTGGGACCCCGGGGAACTC 2503 29 100.0 32 ............................. GGCCCCCAGCACATCCGCCAACGGCTCTCCCC 2564 29 100.0 32 ............................. CTGGGGGAAGTCCAGCCCTACCGGACGGGCCA 2625 29 100.0 32 ............................. ACATAGCCCCTCCTACCCGACAACCCGACAAC 2686 29 100.0 32 ............................. ACCCTGCTTTCCCACTACTACGGGGTCCGGGC 2747 29 100.0 33 ............................. CTGGTGGAGGCCCTCAAGGGGGTGAAGGGGTGA 2809 29 100.0 33 ............................. GGGCGGGCACCCTGTCAGCACTCTTACACGCGA 2871 29 100.0 32 ............................. GGGGGCCGCACCTTCACCCAGGGCGTGGCCCG 2932 29 100.0 32 ............................. GAGGAGGCCCTGAGGCGCTTGGGGCCACCCCC 2993 29 100.0 32 ............................. TAGGGTCTGGGGGGGATGGTGACCTGCCTAGC 3054 29 100.0 32 ............................. CATCGGAGGAGGTGGGATGATGCGCAGGGCAA 3115 29 93.1 0 ..............C............T. | ========== ====== ====== ====== ============================= ================================= ================== 26 29 99.6 32 GTAGTCCCCACGCATGTGGGGATGGCCCG # Left flank : TTCTCATACTGGCGGGTCGGGGCCTGATGATATAAGAGCCTCCCGGCAGCGAAAAGGGCTAGGGCCTCCACCGGATGCAAGGTGGGAGGTCGGTCCGGAATGCGGTAAAGGCCGCGGCCAAGCTGCTCTATCCTGTAACCGGCATGGGACAGGGCCTCGAGGTCCCGCTCCACGGTGCGCACGCTCACACCGTAAAGCTGGGCCAGTTCGGAAACCCGGTGCGGGCGAAGGCTAAGGCGCTCCACCAGGGACAAAAACCGTTCCGCCTTGGACTTCGGGTCCATAGTTGGAAGCATTATAGCCTAAGTTCCGCTATACTGGGGTTACCTGCCCTATCCCTAGCTAGACGTTCAGGGCACCTTGGGGCAGGGGGGTTCTTGACAAAACATCCCTCGCTTCTCACGGGGTTCGAGGCTTTAAACGGGCCTATTGTCTGGAATAGCCCCCTTTACAGACACATAGAGGGGGGTCAGCGGGGGTTTTTGCCGTCTAGGTCATGT # Right flank : GAGAATGTACAAGGTTGCCCCGTAGGATAAGCCCCCCAAAGCTTCGGCCAGGAGGGCCTCCAGCCTTCGCTGGAGGTCCATTTCCAGGGGCCGGAGGGCTAGCTGTAACGCGCCCGTAGGCGTGAGGAGGGAGAAGTGGAGAGTCGCCCGCCTGGGCGTGGGGCTTTCCCTGGAGAAGATCTACGAGAGTGTGGAGCTAGGGACTTCTTTCCAGGCCGACTTGGGGGCCAGGTAGTACCATGGAAATGCCATGGGGCCCGAGGAGGTCAAGGCCAGGATAGGGCCTTACCGGGAAGAGTTGAGGGAGCGTTTTGGGGTGGAGGCCCTCTACCTCTTTGGCTCCTCGGCTCGAGGGGAAGCGGGTGAGGGAAGCGACGTGGACCTTTTGGTGCGCTTTTCCCGTCCCCCGGGCTTTCTGGGCTACATGGGCCTGAAGCTCTTTCTCGAGGACCTTCTAGGGAGACCTGTGGACCTGGTCATGGAGCATACCCTACGGCCGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCATGTGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1411-1011 **** Predicted by CRISPRDetect 2.4 *** >NZ_PEMF01000415.1 Thermus scotoductus strain 18_S18 NODE_88_length_8799_cov_13.6531_ID_175, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 1410 37 97.3 37 ............................A........ CGAGCGTCGTAGGGGATAAACTCTACGTGCGCACGAA 1336 37 100.0 35 ..................................... TTCTCCGCCCCGCGCCGGTTGCGGTAGACCTCGGC 1264 37 100.0 35 ..................................... ATGAGCCGCTTCGCCGCTTGCGTGAACGCCATCTA 1192 37 100.0 35 ..................................... TCCGTCTGGTAGGTAGAGGTCTGGACCGCCTTCAC 1120 37 100.0 36 ..................................... CACGGGGGCCTCGGGCCGGTAGAGGCGTTTGGTCAG 1047 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 6 37 99.5 36 CCTGCAACGTAGCCAAGCTGTGAAGCTTGGATGTAAC # Left flank : TCCCCCGTCCCCAGGTAGGGGTAGTGCCACAGCCTCAGGGGAAGCCGCTTCCCCAGGGCCGCCGCCCTCGGAAGGACCTCCACGGGGTCCAGGAGCCTCCGGCCCCTGAGCAACTCCCCGTAGCGCCGGGCCGCCCGGGCCACCCGGGCAAGCCTGGGGGAGGCCCCCTTCGCCAGGCGGGCAAGCGCCTCCTCCCCCTGGCCGGAGGCCTGGGCGAGCAGGAGGAGGGTCCTCACCGGGCCCTCGAGGGCCGCGGCCAGCCCCTGGGGGTCCTTCGGGGCGAGGGCCTCCCGCACCGCCTGCACCAGCAGGCGGCGGGCCCGGTAGGGGGAGGCCACCAGGAGCCCCCCGTCCCTTAGGAGCTCCCGGGCCAGCCCGGCCAGGGTGCGGTAGGGAACCCCCAGCCTGCGGGCCACCGCCCGGTTGGGGGTGACGTGTATCAGTCCTGGGTCCTCGGCGCGCACACCTTACCTCCTTTCTTCGCTATTTTCGCCTGCCTT # Right flank : TCCCCCCCTGACTGGGTCCCTCTGGAAGCCGGTTTTCAAGGTTCCCCGCGCGAACCTGGGTTGAGAGGGCTTCGCCGCGCGCCGTGATTATACCCCTTCCAACGCCAGTAAATCCCTTCCCCAAGGGCCTAACGCCCCCTGCGCGAACCCCCCGGGGTTTGGGCGCCCGCTTGGGGTCCGCGCAGGACGGGCCGGGCCTCCACGTAGACGGGGTAGGGGTCCTTCTGCCGCTTAGGGTGGCCCAGGCGGGGCGACCGCCAGAGGGCCACCTCCGGGGGCCAGGCCCTGGGGTCCTGGAGGGCCAGGGGGGCCTGCAGGAGGAGGGCGCGGAGGGCCTCCAGGGAGACGGGGTGGCCCGGAGTGGGGAGGAGGAGGCTCGGCTGGCCTTCGGGGTCGTGGACCCCCGCGGCCCGCACCCCGTCCGGGGCGGGGTAGAGGAGGAAGAGGGGGACCGCCTCCCAGGCCAGGAGGGTGGCCACGGGGTGGATGCGCACCTTCTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTGCAACGTAGCCAAGCTGTGAAGCTTGGATGTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.90,-11.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA // Array 1 4297-3473 **** Predicted by CRISPRDetect 2.4 *** >NZ_PEMF01000065.1 Thermus scotoductus strain 18_S18 NODE_159_length_4640_cov_27.7244_ID_317, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4296 29 96.6 32 ............................A GCCTCCCCGCCACCATCACGGACGCGAACGCC 4235 29 100.0 32 ............................. CCACCGGGCCCGGCGTAGGGCCCACCGCTTGC 4174 29 100.0 32 ............................. TTCGTAGCTTAGGTCCCTCCCAACTTTGTCCC 4113 29 96.6 32 ............................T TGGTAGCACCCCCGGGGTCATCGGGGTGGTCG 4052 29 96.6 32 ............................A TGGTCAGTTGGTCCGGGACAACCGGCTTTTCC 3991 29 100.0 33 ............................. ACCTTCCCCACGTTTGGCCGTGGCTGGATGCGC 3929 29 100.0 32 ............................. TATCTCCGCTTCCGGCTTGCGGGCGGTTCTAG 3868 29 96.6 32 ............................C GTTGTGGAACGGCCTCTCCCCCCACACCGTGC 3807 29 100.0 31 ............................. GGGGGGCGGTTGTATTGGCTCGGTACAACTC 3747 29 100.0 33 ............................. ATACGCGCGCTCTGAACTCGGGGCTGCCAAACC 3685 29 100.0 33 ............................. CTCATCCGGGGGGAGGTCGTCCCCCTTAATGTC 3623 29 100.0 32 ............................. GCCGCGGCCCCCAGGTAGGTCAGGGCTATGGT 3562 29 100.0 32 ............................. ACCGACGCTACGAGGCGCTGGAGGCCCTCCTC 3501 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 14 29 99.0 32 GTAGTCCCCACACCCGTGGGGATGGACCG # Left flank : CGGGTGAAGGGGTTTTTGATGCCTCGGCGGCACTACGGGGGGGTTGAGGAGCTTAGGGAGGCGGTGGTTCAGGCCCTCAAGGCCCTGGGGGGTGTGGAGTTGAAAATCTTGGGGGAGGGTACTTAGCTGAAGCAGTCAGGCGCTTTTCGCTTCCTGTCCCATATCAGCAGTTTAAGGGAGTTTCCGGAATTGCTGCGTGAAGGTTAGCCGTGCTAGACTACAGGTGGTGCCCCCTTTTCCTCCCCTTCTTCCGGGGCTGCGGAGCTTGACGACATTACCTGTTCTGCCTCCCGAAAAGACACATAAAGGGAGGTAAGCGGGCGTTTTTGCTGTCCTGATCAAG # Right flank : GAAGTGAGCCCGGAAAGGGCAACTGGGGACGGGGTCAGGGAGCCTTTTAGAGCGGGATATGGCCCATGGGTCAGGGGTCACGGGGAAGCATACCTTGCAGCCCCCGTTCTTCAGAACGGGGAGTTGTCACGGCTAAAGCGGGAAAGGGGGTCCGGTTCCCCCACGAAGGCGTGGGCGGTCATGGGGGAATGAGGACGGCTTGTTCGGGAGCCAGGTGGGTTTCGCCAGCAAAACCCCCTTGCCCTTGAGGACCAAGGCCACCTCCAGCCTTTCCCGGTGGTAGGGCAGGGACTGCTCCTTAACGGTACAGATGAGGACCGAGGTGCCCAAAGGGGTCTCCCCCACCCCCTGGGCGGCGAAGGGCCGGCCCGGGGGCACGGAGAAGTTGGCGAACTCCCCGGGGTAGCGGCGGAAGATCCCCTCCCCCGTGGCCGGAACCAGGGCCCAGGCCCGGCCGGCCAAGGCGGAAACCAGAACCCCACCTGCAACCTGCAAGAACC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACACCCGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTAGTCCCCACACGCGTGGGGATGGCCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 9494-9039 **** Predicted by CRISPRDetect 2.4 *** >NZ_PEMF01000088.1 Thermus scotoductus strain 18_S18 NODE_17_length_20681_cov_32.7922_ID_33, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 9493 29 100.0 32 ............................. GTGGCCCCTTGGGCCCTGCGGTACCTGGACCT 9432 29 100.0 33 ............................. ACAAACAACGCCCCCCAACGGGACCCGGACGCC 9370 29 100.0 32 ............................. GGGACGGGCTCCTCAGGCTCGAGCCTCGGGTC 9309 29 100.0 32 ............................. GCTTTTGTGGAGCAAATGCTTGTTCGTGGGAA 9248 29 100.0 31 ............................. GCCGCCCCCTGCCTAAATTCCCCGATGGGCA 9188 29 100.0 31 ............................. CTGCCCCACCACGACGTGCGGGATGGCCGGC 9128 29 100.0 32 ............................. GCCCTGGAAGAGGAGGGGGGGTAGTCCAATAC 9067 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 8 29 100.0 32 GTAGTCCCCACGCACGTGGGGATGGCCCG # Left flank : TGCCCACCAAGGAACAGGTCCTCGAGGCCCTAAAGGTGGTCTATGACCCGGAGATTCCCGTGAACATCGTGGACCTGGGCTTGGTCTACGACGTGGAGATCCACGAGAACGGGGTGGTGGACGTCACCATGACCCTCACCGCCATCGGTTGCCCCGCCCAGGACATGGTGAAGGCAGATGCGGAAATGGCGGTGATGCGCCTTCCCGGGGTGCAGGGGGTGAATGTGGAGTTCGTTTGGACGCCTCCCTGGACCCCTGCTAGAATGACCGAGGAAGGCAAGCGCATGATGCGCATGTTCGGGTTCAATGTGTAGGGGGCTCAGCTGGGTGGTATAGTGGGCCTCGAGGTGCGAGGGAGCCAGGTGCGTACAGAAGGCTTTTAGGCTCCGGATGTGCGCCTGGGCTCACGCACGGGGGATCTTGAAAGGCTAATCTGGACTGGCTCCCTTTACATACACATAGAGGGGGGTCGGCGGGGGTTTTTGCCGTCTGGGTCATGT # Right flank : CCTATCCATACATCCTCAGCGTAGCCCCTTGCCTGTTTTCCGTCGGACGGAAAGCCCTACCTCACCTTTCCCCTTGTTTCGGGGATGGATCCAGAGGGGTGCGGGGGTTTCTACCGCCTTGCCCGGTTTACGGGGCTCCCTCTTCGGATCTGGCACTGGCTGGGCCTGAGCGCACCACCAGGGTGTCGGCGATGAGGTCATGCCAGGCCTGGCGCTTAGGGTGGAAGAAAGCCCAGAGGTAGCCAAGGAGGAGGGGCAGGGTGGAAAGGGTCTTGCCTACCACCTCCCGCATAAAGGCGGTGAGCCAGTCCACAGGCTGGCCGTCCGTGCGGACCACCTTGAGGCCCAGGGCCATTTTTCCCGGGGTTGCCCCATACAATGCGGTGAAGATCACGTAGTAGGCCCAGCTGGGTATCCAGTTGAAGAGGAGGTCCTGGACGAAGGTGGTGGTTTGCGCCAGGGGGTTTATCCCGGCCAGGGCCATCAGGAGGAAGCTCAGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCACGTGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 17803-15581 **** Predicted by CRISPRDetect 2.4 *** >NZ_PEMF01000088.1 Thermus scotoductus strain 18_S18 NODE_17_length_20681_cov_32.7922_ID_33, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 17802 36 100.0 35 .................................... AAGAAGGCTGTGCCTGTGCTGATCGGGATCCTGGG 17731 36 100.0 34 .................................... TAGCCCCACCCCCTGCTCCCGGGGGAAGAAGGCC 17661 36 100.0 36 .................................... AGGAGGCCCTCCGCCGGGTCCACGGCCAAGAGGCGG 17589 36 100.0 39 .................................... AGGGCTTCCCCGGAGGGCGTGGTCCAGGGCCACGGCCAA 17514 36 100.0 36 .................................... TCGTGGAAGCGCTTGAGGTCCTCTACCCCGCCCGCG 17442 36 100.0 37 .................................... TCCGAAGACGCTAACGTGGTCCGTCCTGATGACCGCC 17369 36 100.0 37 .................................... TTCCAAAGCCCGATCCACCTTGTCGGGCCGCTTCTTG 17296 36 100.0 38 .................................... TCCACATCGGGGGCTCCCCGGGGCGGGGAGGGTGGAAG 17222 36 100.0 39 .................................... GCGCCAACGGCTCCACCGGGTACACCTTCAGCGTGGTGC 17147 36 100.0 35 .................................... GTAGCGCAACCAGGCCTTCAACCCCTCCCAATGGC 17076 36 100.0 42 .................................... AGGGAAAGCTGGCGGCGGGTCACTCTGATGCAGACGAACCGG 16998 36 100.0 40 .................................... GCGGTCTTCCTCACCTCGGGCACCTCCATGGCTAGGATAG 16922 36 100.0 36 .................................... CTCCTGGACCACGGGGACATGCACCTGGACCTCCGC 16850 36 100.0 36 .................................... CCATCATGCCGCCAGGTGGCCGGTCCCGAGCCGGTT 16778 36 100.0 37 .................................... GAGTAGGGCCGGTAGAGGAGGAGGCCCGGGTCGTTGG 16705 36 100.0 37 .................................... GGGCTCCCAGTACCGCTCGCCGTATGCCGTCGCGCGC 16632 36 100.0 35 .................................... GCCCTGGAGGTGGTGGGCAAGACTAAAAACGCCTT 16561 36 100.0 39 .................................... GCCCAGCACTCGGTGCCTGCCCATCTCGTCCGGGGTGGG 16486 36 100.0 39 .................................... CCTGCTCCTCGGATTCCGGAGCTTCCGCGGGTTCCTGCG 16411 36 100.0 35 .................................... AGCCGCGCCTCGTAGACGGGCTCCACCCGCGTGCC 16340 36 100.0 36 .................................... AGAACCCTTCGGATGCTTATCATCGCTCACCTCCTG 16268 36 100.0 37 .................................... TAGCGTGCCCACGATTGAGGAGCTTTTGGACTTTTTA 16195 36 100.0 38 .................................... AAGGTCAAAATCACCCGCGACGGGGCGAACCTGGCCGC 16121 36 100.0 37 .................................... CGGGTCGCCGTAGACCGCTGCAAGCCCGCCCTTGCCC 16048 36 100.0 38 .................................... AAGGTCAAAATCACCCGCGACGGGGCGAACCTGGCCGC 15974 36 100.0 37 .................................... CGGGTCGCCGTAGACCGCTGCAAGCCCGCCCTTGCCC 15901 36 100.0 35 .................................... CTTGAGAAGAGGAGATAGTAGATCCCCCCATCCTC 15830 36 100.0 36 .................................... TCTGCGTCTAGGCTGTTGAAAGCGCTGACCGCGATG 15758 36 100.0 39 .................................... CACAGGGGTTGATGAGATTGTGGACGGCGCGGGAGCCGT 15683 36 100.0 31 .................................... TTACTCATGGCCCCCCCGCCGGGGGCGCCCC 15616 36 72.2 0 CCGAGG....T.................G.A...G. | ========== ====== ====== ====== ==================================== ========================================== ================== 31 36 99.1 37 GTTGCAAAGGCTGATAGCCCCGTAGGGGATTGAAAC # Left flank : TGCGGTGTATTTTCTTCCCCCCGAGGCGGTTCAGCGTACCTGGCGCATTGGCCATCAGGGCATCAAGCGACTCGAGGAGCCGGACATCGTCTAATGCCCACCCCATGCAGGCTTGGAGCCCGCATGGGGGCCCCGGGGTAAAGTCCCTGCAAAGTTTTCTCGGAACTTAGGAGCGCGGGAACCAAAAGCAAAGGGCATAAGGCCCTTTAAGGGGAAGGATCCAGCCCCGGGGAACCCCCGGGTTTGGCTGTCTTTTCACTTGCGCACGCGAAAGCCACCTTTTTTCACAAGCTCTATGCGCATACCGTTTTGTACGATATCCATGGGGCTCAAAAGGCCGATTTCTCATCTTCAAAATGTATATTCGCGTGCGATCACGTCCAGGACGGCATTTTCCTCACATGAGCGCCTCTCATGAACCCCTCCCCCTTGACAAAAAGAAGCCGCGTGCGAAAATGGACCTATGAGCTACCTCCCTAAGCCTATTCTTAGGGGGTAGA # Right flank : CTTCAGAAGCGGCGGTCTTCTACTAACGGCCCCTGAATTTCTTGGACAAGCTCCACCTCGTCCACCTTGAGGCCAGTGGCCCTCTGGACTGCCTCCATGAGCCCGGGCGGCACCCTCTCCGCCTTCAGGCGGAGGACGAGCTTGTCTGTGCCCTCCAGCTTCCTCTCCACCACCACCTGGAAGCCCTTAGGGTCCAGGCCGAAGCCCGCAAGGATGGGCCCAAGCTCCGTGGGGTAGAGCTTCACCCCCTTGACCTTCACCATGGCGTCTGTCCGGCCGAAGACCCCCCGGGGGAGGAGGGTGAGCCCTCCCCGCCTCTCCGCCACGGCTAGGTCCCCGGTGCGGAAGCGCACCATGGGCATGAGGGTCCGGCTTAGGGCGGTGACCACGAGCTCCCCCTTCTCCCCGTCCGGCACGGGCCTGAGGGTCTCGGGGTCTAAGACCTCGAGGACCGCCATCTCCGGGATCTCCCACAGGCCCTCCTTCTCTAAACCCTCTCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAAGGCTGATAGCCCCGTAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.60,-5.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA //