Array 1 85247-86668 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTHW01000005.1 Lacticaseibacillus rhamnosus strain Lrh32 Lrh32_contig00005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 85247 36 100.0 30 .................................... AAGAAACGATCCCGAGTTTCTGGATTGCTT 85313 36 100.0 30 .................................... TCATCAGTATTCATGGAAATATAGGATGCT 85379 36 100.0 30 .................................... ATCATCGAATCTTTGGGGACCTTACCACTT 85445 36 100.0 29 .................................... GATTGTTCGGTTGCTTCTGTGATGCCACC 85510 36 100.0 30 .................................... ATGACTGGTTGCCGGTAAGCGATGAGTTCA 85576 36 100.0 30 .................................... CATACTTGTATGAGCACTTTGACTTGTCAA 85642 36 97.2 30 ....................T............... ACCGTTTGTGTTGCATGAATATGATCACTA 85708 36 100.0 30 .................................... AGGTGCTATGCCGCTTGGCATGACGATTGA 85774 36 100.0 30 .................................... AATAATATTGTGCCAAAAGGTAGTATTCTA 85840 36 100.0 30 .................................... TCCAAGGGCATTCCAGATTGCAGAAGCCCC 85906 36 100.0 30 .................................... GGGTGATGCTGACAAGATCAAGACGGCTGT 85972 36 100.0 30 .................................... CGCCTTACGGGCGACAGCTAGGCCTATGGG 86038 36 100.0 30 .................................... AGATCGAGCATTACGGCTTGCAAGACTGCG 86104 36 100.0 30 .................................... CACAGTGCCATTCCACAAACCCGACAGAAA 86170 36 100.0 30 .................................... CGAGCTTGCGGCCAATATCAAGCTATATGC 86236 36 100.0 30 .................................... GTGTGATCATCATTACCTCTCTGCCACTAA 86302 36 100.0 30 .................................... ATCGCATACTTCATGATGATTGATGCCAGT 86368 36 100.0 30 .................................... CTGTGTTCTCACGTGTCAACAATTATTTCA 86434 36 100.0 30 .................................... TTGTGGTGCCAAAACGGGTTGTTGTCGAGA 86500 36 97.2 30 ...................................G TTTCAGCAAATATGACGTCTAACATGCCTC 86566 36 94.4 30 ..................................AT ACTTGGAAAAGTTGCTATGCAGTTTGAATA 86632 35 83.3 0 .......................AA.C...-..T.A | AA [86653] ========== ====== ====== ====== ==================================== ============================== ================== 22 36 98.7 30 GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC # Left flank : GAGCTGGATTTGGACAAGTTATTCCAACGCTTGATCATCAAGAAGGTAAGTCAATTGATAGAGGATCGGCGGCTGATTGAGTTGATTGAGCAGTCACAACGACTGGCAATGAGCTTATTGAGAGAGCCGTTGTTAAGTGAACTTCCAGTCACAGTCGAACCTGGTGGAAAACTTGAACAAATCATGAAATACTGTAATGTTCATTTTGATGAAGAAGTACTCACGGAGCCTTTCTCGAAAGTTGAAGCGGCAATTAAGACTTTGGCGAAACTTGAGGAGAAACGTCTTGTCATTTTTACCAACATCAGTCATTATTTAGATGTTGATAGTTTGAACAAGCTGTTAGATCAGGTTAAGGAAACATCGTTAGAATTACTTCTCATTGAATTTTCGGATGTCGAACGTAGAAAGTTTTTTGAGAGGTGCCAGTATATCTATATTGACAAAGATTTCATGGATAGCCGTGAACTGATTGATTAAGAGACTGTGTGAAAACACCG # Right flank : AAACCTCACCCCATAAATGCTATGCAAATCCCAAAAGAAGGCAACAGCAATGTCAAAAGCGAAACTAATCCTTTCCCCAGCCTTTTACACTGATCTCAAAGAAATCCGTCACATGTATCAACAGGCGTTCAAATCCATTTACGACAAATATCAAGATCGGGAAACCAACCCCTACTGTGAATCGTTGGAAAGCTTACAGAAAAAAGTTCAAACGGCATAACAATGCCTTCTTCTTTATAATCGTTAAAGATAAACACATAGGCCTGATTCGCGTTGTAACAGATCGCAAAAATTCGGCAGTCCGTATTTCACCATTTTTAATCTTGCCGTCTTATCAAGGAAAGGGATACGCTCAGCTCGGACTACAGTTGATTGAAGAACAGTTTCCGCTCATTCAAACATGGTATGTAGACACGATTGCGGAAGAACCTAAATTGGTACATTTGTATCGTAAAGTCGGCTTTCAGCAGCTGCCAGATCGGGAAACAACGATTAATGAG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //