Array 1 1253-1021 **** Predicted by CRISPRDetect 2.4 *** >NZ_VZAM01000011.1 Prevotella copri strain iAP139 NODE_54_length_8450_cov_34.6314_ID_107, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1252 36 100.0 28 .................................... GACTTGGTATCGCAGGTTTGGCTACCAG 1188 36 100.0 30 .................................... CTCTGACGTATCTTATTCTTATACGCGTCA 1122 36 100.0 29 .................................... GATAATTTGCCATATTGATTTGATTTTGA 1057 36 86.1 0 ............G.C.........AC...A...... | T [1037] ========== ====== ====== ====== ==================================== ============================== ================== 4 36 96.5 29 GATGAACATGCATTATGAATAGTGGGTAAGTACAAC # Left flank : GAAACTATCTGTGTGGAAAATCTTTCAATCAAGGATGGTATGTTGCAGGACAAGAAACATGGTAAGCATAATAAGCAAAAACGTTCTCGCAATAAGCTTATAGTTGATGCAGCTATGGGCATGTTGCGTATCAAGCTGCAGCAGAAATGTAAGTCGAAAGGAATCAACTTCATCAAAATTGAACGTTATTTTCCTTCTTCGAAGACTTGCCACTGTTGTGGAAAAATATTTAAAGGTTTACAGTTAAGTCAGCGTTCATGGGTGTGTCCTTCATGTCGTGCAAAGTTGGATAGGGATGTGAATGCTGCTATTAATATTAAAAATTTTGGAATTAGCAATAGTTCCCTAGGGAGGTGTACCCCCGAAGTAAAGTCTGTGGAGCATCGTAAGCAGAAACGAAGAAATGCCAAAAGCAGTGACGTTTCAGATGTAGAGAAGCAGAAATAAGAGAGCTCTAACATTGAGCAAATGCCTGTTATACAGAATAATATTTATCTGAG # Right flank : ATGCAGTCGCTATCCATTCGGCTGACGTCTGATGGCTTTACTTTCAGAATTTTTCATTAGGCAAAATGTATATTACGTATTTGTTCTTCTCTACATATCTTGTATATCCTCTAAGATTCAGAATATGCAGATGGAATTAGTAAAAAAATAATTGATAGTTAATTATGGATAAGACAATAAATACAACGCTCATCATAGGAAATGGGTTTGATTTAAGTATGGGTAAACATACCAGTTATAAGGAATTTTATGAGAAGCTGGTAAAGAATAAAGGTTTTTGGGATACCTCAAATCCGCAACCTATAGGGTTTCGTGGGAATTTACTTGTAAAACGACAAAAATTCTTTTATTGTACATATTCCTTGGGCATAACAGAAACGTCGTAAACACAAAATTCCCTTACCCCATAAAGCGACTTGAGGTAATACGCCGGTTTAACCAGAAAAGCATGGCCTTTAACCAAAGTCTGTCTTGAACAGGTTAGCATAAGCATTGTTGTC # Questionable array : NO Score: 2.68 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATGAACATGCATTATGAATAGTGGGTAAGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 209323-211918 **** Predicted by CRISPRDetect 2.4 *** >NZ_VZAM01000049.1 Prevotella copri strain iAP139 NODE_5_length_226204_cov_33.0005_ID_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 209323 30 100.0 35 .............................. CCGTTTAATGAGCATGATACCCACGTTGTTTGTGT 209388 30 100.0 35 .............................. AGAAGTGACAAACTTTATAAAAAGTGAATATAAAA 209453 30 100.0 34 .............................. TTATAACTTTAATTACGTAGCCTAATGAAAAAAC 209517 30 100.0 36 .............................. TTGTTGATGATTTAGTTGCTGATTTCCGATATCTGT 209583 30 100.0 37 .............................. TTATAACGAAGAGATGGCAGATATGCATCTTTGTCTC 209650 30 100.0 35 .............................. GTAAGAAACTCAATTTCAATTGGAACGGCAAAACA 209715 30 100.0 38 .............................. TGAATGGCCGTCACCCCTTCTTGGAAATAGAACGAAAT 209783 30 100.0 39 .............................. CCCACCGCCCCCTTGAGTCTCTGATGTCCCTTTGCTAGA 209852 30 100.0 34 .............................. GTCTATCGTCGCCATTGAACGTGCAAAGGCAACT 209916 30 100.0 36 .............................. ATGCTTGAAGGTTACTAAGGCTCGGTTGCGCCCATG 209982 30 100.0 39 .............................. TAGGGTGGGACCCACGGCTGCTGCGCAGCCCCCACCCTA 210051 30 100.0 38 .............................. ATGTTGTTTCTACTCTCCGCGAATCTCTCTCTGCTACA 210119 30 100.0 34 .............................. GAGACAAAAGGTCAACATTTCCATTGTAAGAAGC 210183 30 100.0 39 .............................. GCTTTTTGTGCACCAGCTTGTACACTAGTTTTTACTTTA 210252 30 100.0 36 .............................. AGGCTCTGGAGGGCGAACTGGGCTGCAAGCTACTGA 210318 30 100.0 37 .............................. GATAGAGAAGCAGATAGAATACTATAAAGATGTGATA 210385 30 100.0 34 .............................. AGAGCTATTCCTGCGTGGATATGCAGTATAAGGA 210449 30 100.0 36 .............................. GAAAAAGGATTTTGAGTCAAAGTACAGCGAGGATGA 210515 30 100.0 34 .............................. GGCTTATTTGTCGCCTAGCGGAATTTAACCCCCT 210579 30 100.0 38 .............................. AAGAATGATGCAAGTAAAACTCAGGCAAAGCTGAGAGT 210647 30 100.0 37 .............................. TAGTAAAATATGGATATGAATATAAAGGCATATCCCG 210714 30 100.0 34 .............................. AGGCACGCCGCAAGCAGTATATCCTCGGCATCAT 210778 30 100.0 34 .............................. GTTATGATGAAGAGGATTTCGCTACTGATGGCGC 210842 30 100.0 34 .............................. AAAAGAACGCAGTTATAAATCTCGCTATTGAATA 210906 30 100.0 35 .............................. TTCAGTACCGCTACGCATGGCGGAACTACGCTCCG 210971 30 100.0 36 .............................. AAGTGTTCCTTGATTTTTTTCCAGAGTGCGCAGTTG 211037 30 100.0 37 .............................. GCGGTTATCTCTGCCTTGGCAGTAATGAGGAGTTGCA 211104 30 96.7 34 .............T................ TAGAATTATGGCAGTAAATCAAAAAGCAATCGGG 211168 30 100.0 35 .............................. GCGCATGCTCATGACCACCGTGGGCGCAGCATACA 211233 30 100.0 36 .............................. AGTGGAAGAACTATCTCACCAAGAAGGAGGCATCTG 211299 30 100.0 35 .............................. GAGAAGGGATTGATAAATTCACAGGAGAATGCTAT 211364 30 100.0 37 .............................. TTTCAGCCATCATTGATGAAGAGGTGAAAGCTGTAGA 211431 30 100.0 34 .............................. CAATTTTCAGCACCTCGTGTGACAATCACGAACC 211495 30 100.0 34 .............................. ATTTGGTCTAGCATATCATATACAATAGTAATAA 211559 30 96.7 34 ............................T. TTTTTTCTAGGTTTTAAAAAGAAAAAGGCTGGAA 211623 30 100.0 37 .............................. AGTACAACATCAAGGATGAGTGCATCAATCCGCACGT 211690 30 100.0 35 .............................. ATCATCTTTGCGCCTTCGATTGGTATCTCTTGATC 211755 30 100.0 36 .............................. GAAATATAGAGAGAAAAGCGGGCGTGCGTATATCGC 211821 30 100.0 39 .............................. ATAGACAATATGTATTGAGTTAATTCCGAACAAAGTTCT 211890 29 80.0 0 AA..T...C................-..T. | ========== ====== ====== ====== ============================== ======================================= ================== 40 30 99.3 36 GTTCAAATTGTACCTTTATGGAATTGAAAT # Left flank : CCTTTTAAAATGTATTGGTGATATGTATGTGATTATAGTTTATGATGTTGGTGAGAAGCGAGTAGGCAAAATGTTGAAGCTTTGCCGCCAATATTTGTGTTGGATTCAGAACTCAGTTTTGGAGGGAGAATTATCTGAAGCTAAACTTCGGGAATTGCAAATGAAGATGAAAGCTATCATTGATGAATCCGAGGATAGTGTCATTGTTTTCACCAATAAAATGGGGTATAATATGAACAAACAGATTCTTGGAAAAGAAAGAATGTCTACCGATAATTTCTTATAAAGAGTTGTCGATGTGGTTCTAATTTTCCGTTTCTAGGTTCGGAAAAACCTCCGAAAGTGTTCTTTGACTTATTGAAACCTCCATAAATAGGCAGGTTGTCGTAAGGCCGCAGAAAAAATATCTTTAGGCATCGACATTTTTTCTGAAGATTTTTTGTATCTTTGCACCCGCAAACCTATTGATTCTTCGAGCATCTATGTCTAAGGATTAACGG # Right flank : TCAGAAGTACTGATAGCTTTAGTATTATACCGCAATCTCTAGTTATAAGTGTTCAGAATGTGTCTCCTCCTGCCACAGCATTCGACTCCTTCAGCTATCGCATTCGACTCCTTCAGCTAATGCATTCGACTCCTTCAGCTAATGCAGCCGTCTCCTTCTGCCAACTCAGCCGTCTCCTTCACCTAATGCAGTCGACTCATTCAGCTAACTCAGTCGTCTCCTTCAGCCACCGCATTCGACTCCTCCAGCTATCGCATTCGTCTCCTCCGCTCACCGCATTCGTCTCCTTCAGCCACTGCATTCGACTCCTTCAGCTAATGCAGCCGTCTCCTTCAGCCAACTCAGCCGTCTCCTTCAGCCACCGCAGCCGTATGTGTCAACTCAATGAAGTAGATGAACTCGTGAAATGAAGTGGATGAACTCGTGAAATGAAGTGGATGAGTTCGCATAATGAAGTTCATGATTTCTGCATAATAATTAATACATGCGAATGGTAAAGC # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAAATTGTACCTTTATGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA //