Array 1 45109-45538 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV800985.1 Neisseria sp. HMSC074B07 Scaffold1151, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 45109 33 100.0 33 ................................. CTCAAATCTTTTATGCAATATAAAACAATGCTT 45175 33 100.0 33 ................................. TCCTGATACTGTATGTTCTCAATGGTATTCGTA 45241 33 100.0 35 ................................. GTCATAAAACCGACCTTTCCCAACGGGAGCAGGGG 45309 33 97.0 32 A................................ ATAGACTGCTTTATATCTTTCCTAAGCGGAAT 45374 33 97.0 33 C................................ AGGCTTGGCAGAAACGCCAAAAACAGGCGTCCC 45440 33 97.0 33 A................................ CTGCACATCATCCATCAGAGACTGCTCATCTTC 45506 33 97.0 0 G................................ | ========== ====== ====== ====== ================================= =================================== ================== 7 33 98.3 33 TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : TGCACATGGGAATACAAAATGCTGATGCTGATTACTTACGATATTTCGCTGGAAGACGCGGAAGGACAGGCAAGGTTGCGGCGCGTGGCGAAATTGTGTCTGGACTACGGCGTGCGCGTGCAGTATTCAGTGTTCGAATGCGACATCGCACCCGACCAGTGGGTTGTTTTAAAAGACAAACTCTTGAAAACCTACAACCCTGAAACCGACAGCCTGCGCTTTTACCATTTAGGCAGCAAATGGCGGCGCAAAGTGGAACACCACGGCGCGAAACCGGCGGTGGATGTGTTTAAAGATACGTTGATTGTATAAATCGCCAACCTGCGGTTCTCATGAAAATGCGGCAGGGTTGGCGAATGGGGATTGTTCTTTAACAATCAGGATATTGCGAATGCGGGTGTAACGGAAAAGGCTGTGTTATACTCGCGTTCGCGCTTTTCTTGGGAGCTTAGCGAAATCGGGGCTGCGAAACCTGATGGAGCAAGGCTTTTGAGAGAGGC # Right flank : CTCCTGTATTACTTTTGCGCTACGTTGGTTTTTCATGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACACGGGACATCGGGACGCATCCATTCTTCCAAGACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCGATGCATCTTATGTGCATATGATGCTTAATGAAGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGCCATGAACGCTTGAAGCTCCGCATTTCTGCGGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACATAAAACTCTTTTTCAAGCTGTTTAAAGCTGGTTCCAGCCGCCTTCGGGCGGCTGTGTGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 45703-45933 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV800985.1 Neisseria sp. HMSC074B07 Scaffold1151, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 45703 33 93.9 32 NN............................... ACGGGACATCGGGACGCATCCATTCTTCCAAG 45768 33 97.0 34 A................................ CGATGCATCTTATGTGCATATGATGCTTAATGAA 45835 33 100.0 33 ................................. TGCCATGAACGCTTGAAGCTCCGCATTTCTGCG 45901 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ================================== ================== 4 33 97.7 33 GCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : GAAACTCCTGATACTGTATGTTCTCAATGGTATTCGTATCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGTCATAAAACCGACCTTTCCCAACGGGAGCAGGGGACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACATAGACTGCTTTATATCTTTCCTAAGCGGAATCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAGGCTTGGCAGAAACGCCAAAAACAGGCGTCCCACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCTGCACATCATCCATCAGAGACTGCTCATCTTCGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTCCTGTATTACTTTTGCGCTACGTTGGTTTTTCATGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CATAAAACTCTTTTTCAAGCTGTTTAAAGCTGGTTCCAGCCGCCTTCGGGCGGCTGTGTGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGGTGGCAAAGCATACCAACGTTTCTCCCAGCGGCGACCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCTATCATTTAAACAAGAATAAAGAGTGGGTAAACCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGATAACTCAAATGCCTGGTCGAATTGATAAACATGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGCCTCAGAGCGTGGTGGCGATGATTACAGTCATCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.40,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 46095-46331 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV800985.1 Neisseria sp. HMSC074B07 Scaffold1151, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 46095 33 93.9 37 NN............................... TGGTGGCAAAGCATACCAACGTTTCTCCCAGCGGCGA 46165 33 100.0 33 ................................. CTATCATTTAAACAAGAATAAAGAGTGGGTAAA 46231 33 100.0 35 ................................. TGATAACTCAAATGCCTGGTCGAATTGATAAACAT 46299 33 97.0 0 G................................ | ========== ====== ====== ====== ================================= ===================================== ================== 4 33 97.7 35 CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : GTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACACGGGACATCGGGACGCATCCATTCTTCCAAGACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCGATGCATCTTATGTGCATATGATGCTTAATGAAGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGCCATGAACGCTTGAAGCTCCGCATTTCTGCGGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACATAAAACTCTTTTTCAAGCTGTTTAAAGCTGGTTCCAGCCGCCTTCGGGCGGCTGTGTGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CTGCCTCAGAGCGTGGTGGCGATGATTACAGTCATCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACACTATTTGTAACTCTTTTTCACTTTTTAAAAAGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCTGAATTATAACGATTTAGCATCATCTCTTTTTCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTGGACATTTTTAATGGTTTTCAACAAAGCACTAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAAGGAAATACTTTAATTTGCGGTCATCAAGATATCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.40,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 46497-46727 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV800985.1 Neisseria sp. HMSC074B07 Scaffold1151, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 46497 33 97.0 32 N................................ ACTATTTGTAACTCTTTTTCACTTTTTAAAAA 46562 33 100.0 33 ................................. CTGAATTATAACGATTTAGCATCATCTCTTTTT 46628 33 97.0 34 C................................ TTGGACATTTTTAATGGTTTTCAACAAAGCACTA 46695 33 97.0 0 A................................ | ========== ====== ====== ====== ================================= ================================== ================== 4 33 97.8 33 GCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGGTGGCAAAGCATACCAACGTTTCTCCCAGCGGCGACCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCTATCATTTAAACAAGAATAAAGAGTGGGTAAACCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGATAACTCAAATGCCTGGTCGAATTGATAAACATGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGCCTCAGAGCGTGGTGGCGATGATTACAGTCATCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CAAGGAAATACTTTAATTTGCGGTCATCAAGATATCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTTTCATATCAGCACCTATAATATTATAATATTTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACACGAAGGGGATAGAAGTAAAAGAACTTGCCTTAGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTCTATCCCCGTAGGGATTTAATGATGGCTTTGAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTACAACAACAGTTTATCCATATGATAAATGGCATGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 46890-47120 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV800985.1 Neisseria sp. HMSC074B07 Scaffold1151, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 46890 33 90.9 33 NNN.............................. TTTTCATATCAGCACCTATAATATTATAATATT 46956 33 97.0 33 T................................ ACGAAGGGGATAGAAGTAAAAGAACTTGCCTTA 47022 33 97.0 33 G................................ TCTATCCCCGTAGGGATTTAATGATGGCTTTGA 47088 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ================================= ================== 4 33 96.2 33 ACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : TGTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACACTATTTGTAACTCTTTTTCACTTTTTAAAAAGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCTGAATTATAACGATTTAGCATCATCTCTTTTTCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTGGACATTTTTAATGGTTTTCAACAAAGCACTAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAAGGAAATACTTTAATTTGCGGTCATCAAGATATCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CTACAACAACAGTTTATCCATATGATAAATGGCATGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCCAAAGGGTCAATCATAGGCAATACTTCGACACCCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGACGTAACGCGCATCTTTTTGACCCCAGTTGACCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGGTTATCTGTGTTCACTGAACACAAAATTCCGTTAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,-0.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 6 47285-47450 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV800985.1 Neisseria sp. HMSC074B07 Scaffold1151, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ================================= ================== 47285 34 94.1 33 N................................C CAAAGGGTCAATCATAGGCAATACTTCGACACC 47352 34 100.0 31 .................................. ACGTAACGCGCATCTTTTTGACCCCAGTTGA 47417 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== ================================= ================== 3 34 98.0 32 CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACG # Left flank : TGTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTTTCATATCAGCACCTATAATATTATAATATTTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACACGAAGGGGATAGAAGTAAAAGAACTTGCCTTAGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTCTATCCCCGTAGGGATTTAATGATGGCTTTGAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTACAACAACAGTTTATCCATATGATAAATGGCATGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : GGTTATCTGTGTTCACTGAACACAAAATTCCGTTAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGACAAATACTCCTCTCAAACGGGCTTGGGCTGTTGTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAAGCAATCCGCCAAGAAGTCGTCAAACACTTGCAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTATGCGGAGCATGGTGGCAGTTTTGTTGGGATGTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAAAAGCTCGATGTCGGATTTGACGTCAACCTTTACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.26 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.20,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,1.05 Confidence: MEDIUM] # Array family : I-C [Matched known repeat from this family], // Array 7 47682-47913 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV800985.1 Neisseria sp. HMSC074B07 Scaffold1151, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 47682 33 97.0 34 T................................ AAGCAATCCGCCAAGAAGTCGTCAAACACTTGCA 47749 33 100.0 33 ................................. TATGCGGAGCATGGTGGCAGTTTTGTTGGGATG 47815 33 97.0 33 T................................ AAAAGCTCGATGTCGGATTTGACGTCAACCTTT 47881 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ================================== ================== 4 33 98.5 34 ACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : TGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCCAAAGGGTCAATCATAGGCAATACTTCGACACCCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGACGTAACGCGCATCTTTTTGACCCCAGTTGACCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGGTTATCTGTGTTCACTGAACACAAAATTCCGTTAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGACAAATACTCCTCTCAAACGGGCTTGGGCTGTTG # Right flank : CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTCAAGCGGATTGCCGTTGCATTTTGCGATGGTTACCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACATTCTCGTGGTCGCCTATATGTGAAGCTGCCCAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTCCGTGAAAACATGGAAAAGTACGGATTCGGACCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACATCATCGGCATACTGCCTTATGCCTTGCTCTGTCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGACCGTACAGGTTGCCGCCGCGCCGCGCGCACCTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGCCAATCAGAACCAATTTGCCGCATACCTCGGTTCCAGC # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [46.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 8 48011-48439 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV800985.1 Neisseria sp. HMSC074B07 Scaffold1151, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 48011 33 90.9 34 NNN.............................. TCAAGCGGATTGCCGTTGCATTTTGCGATGGTTA 48078 33 100.0 33 ................................. ATTCTCGTGGTCGCCTATATGTGAAGCTGCCCA 48144 33 97.0 32 A................................ TCCGTGAAAACATGGAAAAGTACGGATTCGGA 48209 33 100.0 33 ................................. ATCATCGGCATACTGCCTTATGCCTTGCTCTGT 48275 33 100.0 33 ................................. GACCGTACAGGTTGCCGCCGCGCCGCGCGCACC 48341 33 97.0 33 T................................ GCCAATCAGAACCAATTTGCCGCATACCTCGGT 48407 33 90.9 0 T..............................NN | ========== ====== ====== ====== ================================= ================================== ================== 7 33 96.5 33 CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : TTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGACAAATACTCCTCTCAAACGGGCTTGGGCTGTTGTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAAGCAATCCGCCAAGAAGTCGTCAAACACTTGCAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTATGCGGAGCATGGTGGCAGTTTTGTTGGGATGTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAAAAGCTCGATGTCGGATTTGACGTCAACCTTTACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACACCCAAATCTTTCAGGATTGCCGCCAACGCATCGTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCAAGACGGCAAAGTCCACTTGGTTGCCAGCAAAGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCAAGACGCACTCGCGTCCATCGGCACGTCCGCCGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCAAGCTGTCAGGTTTACCAACATCCCCAAGTTATCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGCAAAATCCTCGGGCGAAACGGTCAGGCTGCCTTGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAACAACGAACAGCTCGAGTTGATGAACCAAAAATCCA # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 9 48537-48967 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV800985.1 Neisseria sp. HMSC074B07 Scaffold1151, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 48537 33 97.0 34 N................................ ACCCAAATCTTTCAGGATTGCCGCCAACGCATCG 48604 33 100.0 33 ................................. CAAGACGGCAAAGTCCACTTGGTTGCCAGCAAA 48670 33 97.0 33 G................................ CAAGACGCACTCGCGTCCATCGGCACGTCCGCC 48736 33 97.0 33 G................................ CAAGCTGTCAGGTTTACCAACATCCCCAAGTTA 48802 33 100.0 34 ................................. GCAAAATCCTCGGGCGAAACGGTCAGGCTGCCTT 48869 33 97.0 33 G................................ AACAACGAACAGCTCGAGTTGATGAACCAAAAA 48935 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ================================== ================== 7 33 98.3 34 TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : TTGAAACTCAAGCGGATTGCCGTTGCATTTTGCGATGGTTACCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACATTCTCGTGGTCGCCTATATGTGAAGCTGCCCAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTCCGTGAAAACATGGAAAAGTACGGATTCGGACCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACATCATCGGCATACTGCCTTATGCCTTGCTCTGTCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGACCGTACAGGTTGCCGCCGCGCCGCGCGCACCTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGCCAATCAGAACCAATTTGCCGCATACCTCGGTTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGCCTTCGGGCGGCTGTGTGTTGAAACAGGCTAAGTATCTATATGACAACCCACCGCCTCCACCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTCGGTGCGCCGTTTGCGATAACGCGCGTCATGCACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCTATTAAAACAAAAGTGTCAGAGGCTGATGGTTCCAGCCGCCTTCGGGCGGCTGTGTGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTTTGGGGCTGGGGGTTACGCTCGTCTCGTATGAAGCCAGCCG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 10 49064-49296 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV800985.1 Neisseria sp. HMSC074B07 Scaffold1151, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 49064 33 87.9 35 NNNN............................. AGGCTAAGTATCTATATGACAACCCACCGCCTCCA 49132 33 97.0 34 C................................ TTCGGTGCGCCGTTTGCGATAACGCGCGTCATGC 49199 33 100.0 32 ................................. CTATTAAAACAAAAGTGTCAGAGGCTGATGGT 49264 33 87.9 0 T.............................NNN | ========== ====== ====== ====== ================================= =================================== ================== 4 33 93.2 34 ACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : TGAAACACCCAAATCTTTCAGGATTGCCGCCAACGCATCGTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCAAGACGGCAAAGTCCACTTGGTTGCCAGCAAAGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCAAGACGCACTCGCGTCCATCGGCACGTCCGCCGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCAAGCTGTCAGGTTTACCAACATCCCCAAGTTATCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGCAAAATCCTCGGGCGAAACGGTCAGGCTGCCTTGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAACAACGAACAGCTCGAGTTGATGAACCAAAAATCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTTTGGGGCTGGGGGTTACGCTCGTCTCGTATGAAGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACATCATCGGCATACTGCCTTATGCCTTGCTCTGTCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTCAATGGTCATGCGTATAGTCCAAGAATTACGCGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAACATAGACCGTCGTAGAATCGTATGCCTTACCCGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAACATCGATATGTTAACGCGTTAACACGTTAAGTCAACAACCCAGCCGCCTTCGGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.52 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [3-3] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 11 49391-49763 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV800985.1 Neisseria sp. HMSC074B07 Scaffold1151, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ======================================== ================== 49391 33 90.9 35 NNN.............................. TTTTGGGGCTGGGGGTTACGCTCGTCTCGTATGAA 49459 33 100.0 33 ................................. ATCATCGGCATACTGCCTTATGCCTTGCTCTGT 49525 33 97.0 33 C................................ TCAATGGTCATGCGTATAGTCCAAGAATTACGC 49591 33 100.0 34 ................................. AACATAGACCGTCGTAGAATCGTATGCCTTACCC 49658 33 100.0 40 ................................. AACATCGATATGTTAACGCGTTAACACGTTAAGTCAACAA 49731 33 90.9 0 C..............................NN | ========== ====== ====== ====== ================================= ======================================== ================== 6 33 96.5 35 GCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : TGTGTTGAAACAACAACGAACAGCTCGAGTTGATGAACCAAAAATCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGCCTTCGGGCGGCTGTGTGTTGAAACAGGCTAAGTATCTATATGACAACCCACCGCCTCCACCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTCGGTGCGCCGTTTGCGATAACGCGCGTCATGCACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCTATTAAAACAAAAGTGTCAGAGGCTGATGGTTCCAGCCGCCTTCGGGCGGCTGTGTGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCCTTTTCCAAAAAGATATGCCGGAATCTCCAGTTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAAATCTGCCGAACATCACAAAAATTTCGGTCTCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACATCTGTAGGAACGGAATAACCGTTTTAATTAGGGACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCTATGTAAACCGGTGAACAAAGTGAACGGTTTACATCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAAATCTGCCGAACATCACAAAAATTTCGGTCACGCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAACGTAGCCGTCATACATGAGGTTTTGAGGGCTT # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 12 49863-50360 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV800985.1 Neisseria sp. HMSC074B07 Scaffold1151, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 49863 33 100.0 33 ................................. CCTTTTCCAAAAAGATATGCCGGAATCTCCAGT 49929 33 97.0 32 T................................ AAATCTGCCGAACATCACAAAAATTTCGGTCT 49994 33 100.0 34 ................................. ATCTGTAGGAACGGAATAACCGTTTTAATTAGGG 50061 33 97.0 35 A................................ CTATGTAAACCGGTGAACAAAGTGAACGGTTTACA 50129 33 97.0 34 T................................ AAATCTGCCGAACATCACAAAAATTTCGGTCACG 50196 33 100.0 33 ................................. AACGTAGCCGTCATACATGAGGTTTTGAGGGCT 50262 33 97.0 33 T................................ CGACTTGGTAGCCCATTAGCAATCCTTATAGAT 50328 33 97.0 0 A................................ | ========== ====== ====== ====== ================================= =================================== ================== 8 33 98.1 34 CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTTTGGGGCTGGGGGTTACGCTCGTCTCGTATGAAGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACATCATCGGCATACTGCCTTATGCCTTGCTCTGTCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTCAATGGTCATGCGTATAGTCCAAGAATTACGCGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAACATAGACCGTCGTAGAATCGTATGCCTTACCCGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAACATCGATATGTTAACGCGTTAACACGTTAAGTCAACAACCCAGCCGCCTTCGGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG # Right flank : CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACATCGGCTGAATATTTCCATTTTGAACAACATCCCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGTATCTCTCCCCTGAAACGGGCGACATCGGACACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCAAATGTTTAAACGGAATAATAATCGCCGTATCACCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCGGGCGGCTGTGTGTTGAAACATAGTTACCGGCAACCTGACAAGATTCCAAGCTGCCAGCC # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 13 50459-50690 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV800985.1 Neisseria sp. HMSC074B07 Scaffold1151, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 50459 33 93.9 33 NN............................... ATCGGCTGAATATTTCCATTTTGAACAACATCC 50525 33 100.0 33 ................................. TGTATCTCTCCCCTGAAACGGGCGACATCGGAC 50591 33 97.0 34 A................................ CAAATGTTTAAACGGAATAATAATCGCCGTATCA 50658 33 97.0 0 ................................N | ========== ====== ====== ====== ================================= ================================== ================== 4 33 97.0 34 CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : AACAAATCTGCCGAACATCACAAAAATTTCGGTCTCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACATCTGTAGGAACGGAATAACCGTTTTAATTAGGGACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCTATGTAAACCGGTGAACAAAGTGAACGGTTTACATCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAAATCTGCCGAACATCACAAAAATTTCGGTCACGCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAACGTAGCCGTCATACATGAGGTTTTGAGGGCTTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCGACTTGGTAGCCCATTAGCAATCCTTATAGATACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCGGGCGGCTGTGTGTTGAAACATAGTTACCGGCAACCTGACAAGATTCCAAGCTGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACATTTTCTGAAATGCCGTTATTTTTTTGGTCCGGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGTTTTAAGTTGATTGCTAAATTTATATCAGGAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGTTCAATCCGTATGCAATCGGCGTGGTAAATGGCAGCCAGCT # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.40,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 14 50787-51016 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV800985.1 Neisseria sp. HMSC074B07 Scaffold1151, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 50787 33 90.9 33 NNN.............................. ATAGTTACCGGCAACCTGACAAGATTCCAAGCT 50853 33 100.0 32 ................................. ATTTTCTGAAATGCCGTTATTTTTTTGGTCCG 50918 33 100.0 33 ................................. TGTTTTAAGTTGATTGCTAAATTTATATCAGGA 50984 33 93.9 0 A...............................N | ========== ====== ====== ====== ================================= ================================= ================== 4 33 96.2 33 GCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : GTTGAAACCGACTTGGTAGCCCATTAGCAATCCTTATAGATACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACATCGGCTGAATATTTCCATTTTGAACAACATCCCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGTATCTCTCCCCTGAAACGGGCGACATCGGACACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCAAATGTTTAAACGGAATAATAATCGCCGTATCACCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGTTCAATCCGTATGCAATCGGCGTGGTAAATGGCAGCCAGCTGCCTTCGGGCGGCTGTGTGTTGAAACAGTCATCGCGTTTGGCAACGCTTCAGAAACTGCCCAGCTGCCTTCGGGCGGCTGGGTGTTGAAACCTGAGCTGTTGGGCGTTTTGGCTTCGGGCTGCATCCAGCCGCCTTTAGGCGGCTGGATGTTGAAACGGTCACGCGTACGCGCGGAATCGCGCCGATGGCGCCAGCCGCCTTTAGGCGGCTGTGTGTTGAAACATCGGCTCAGTCGCAGAACCGCGCATATCTGGATTCAGCCGCCTTCGGGCGGCTGGGTGTTGAAACACATCCTCGAAATCCCGCTCCGTCATCTCCCAGCCAG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,-0.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //