Array 1 51-948 **** Predicted by CRISPRDetect 2.4 *** >NZ_CWMM01000269.1 Listeria monocytogenes isolate LM51, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 51 36 100.0 30 .................................... AGTATTTATTATCTCTATTACTTTTGTATA 117 36 100.0 30 .................................... CGTATTCAAAAGTATATCCGCTAGCCTCAA 183 36 100.0 30 .................................... TAGGTTTAGGGAGTAAATTAGCTCCTTTGG 249 36 100.0 30 .................................... GGTAAAACAAGCATCGGCGAAGCAGTAACA 315 36 100.0 30 .................................... TCCTAAATCTGAAAACAAAAACTACGAGTT 381 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 447 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 513 36 100.0 30 .................................... AAAGCAATAAATCAGATCATAAAGGAGCCT 579 36 100.0 30 .................................... CGACGGAAAAATTAGACGACGCTAATGTGC 645 36 100.0 31 .................................... TATAGTCTGTTTTTTCGTAAGTGAGCAGCGC 712 36 100.0 30 .................................... TTGGGCAAAATGACCGTAATAAATCCATTC 778 36 100.0 30 .................................... TTAGCACTTATATAGAAGCCCCGCCCCTAC 844 36 100.0 30 .................................... AGTGATGGGGAAGAGATTGAACTTATGTTT 910 36 86.1 0 .............A.....C.....T.A.......G | A,A,C [935,941,944] ========== ====== ====== ====== ==================================== =============================== ================== 14 36 99.0 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : ATTTTGAATGCTACCAAAACGAAATAATATTGATAATATCGCTCTTGCTAG # Right flank : ATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATGTAAGTAAAGAGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTTAGCAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 1758-5 **** Predicted by CRISPRDetect 2.4 *** >NZ_CWMM01000272.1 Listeria monocytogenes isolate LM51, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1757 36 100.0 30 .................................... GCAATAGACCAGTTAGGTGTCACAGGTGCG 1691 36 100.0 30 .................................... GATAGTAGTATAATAACTGTGCTAATATGG 1625 36 100.0 30 .................................... TTCGTACCATAGTATACACATGCAGGGGCG 1559 36 100.0 30 .................................... CATATAGATGTTTCCTTTCTACTCGTATAT 1493 36 100.0 30 .................................... AAATATTATTCAATGCTGTAACTGTAAAAG 1427 36 100.0 30 .................................... TACTTTTATTGTCTGCTAAGAATACTACTA 1361 36 100.0 30 .................................... ATTGTACAAATTCCAAGTAACTCATCATTA 1295 36 100.0 30 .................................... TTTTTCACGTTTGTACTGTCTCTCCTCGTA 1229 36 100.0 30 .................................... TAACTTTAGATACTGCTAAAGAATTAGCAA 1163 36 100.0 30 .................................... TGTCTGAATGTAGTTAATATCTTCAACTTG 1097 36 100.0 30 .................................... CTTCAGTTTCACCTGTGAATACGCCGTTTA 1031 36 100.0 30 .................................... GCGCTTCAGTTTCAGCATTGGTCTTCTTAG 965 36 100.0 31 .................................... TCTCTTGCATTTGGTTCTGAATAATCTCGTA 898 36 100.0 30 .................................... AGAGCAATGTAGTCATTCAGCCAATGCCCT 832 36 100.0 30 .................................... ATATGGGGGCTTATTGTATGGCTAATATAC 766 36 100.0 30 .................................... ACGGGGCATTTAATGTTGGCAAGCGCAATT 700 36 100.0 30 .................................... TCCTCAGATAAGGTTTAGTACGCAAGACTC 634 36 100.0 30 .................................... TCCACTTCGACGCTGGACGGGCTCTCCTCA 568 36 100.0 30 .................................... CAATGCTTGGGGCTATGATGGCATGGATAA 502 36 100.0 30 .................................... CTCTTTTCGATATTCCGGAAGAGGTACTCC 436 36 100.0 30 .................................... CTTTTGTGTCTTCGGTAGCTTTGTCCATTA 370 36 100.0 30 .................................... CCAGAGTCGCTTTTTCTTCCGGCCAGTCTG 304 36 100.0 30 .................................... GTGTGTTATCTATTTGTAGCGTGGGTGTAT 238 36 100.0 30 .................................... ATATACAATGTCTAAGCTTAATCTTTCGGT 172 36 100.0 30 .................................... GAAATAATATTGATAATATCGCTCTTGCTA 106 36 100.0 30 .................................... AGTATTTATTATCTCTATTACTTTTGTATA 40 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 27 36 100.0 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACAGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGA # Right flank : CCGTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [3.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 35039-33710 **** Predicted by CRISPRDetect 2.4 *** >NZ_CWMM01000076.1 Listeria monocytogenes isolate LM51, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 35038 29 100.0 37 ............................. CAATGCTTAAACCGAGAGCATCAAATTGTTCCCATGC 34972 29 100.0 36 ............................. ATTACAGTACAAGCAAGGGTTATTGAGTTAAATATT 34907 29 100.0 35 ............................. ATTAATGATAAGAGCGGAAAGAAAACTTTCAAGGG 34843 29 100.0 37 ............................. TCCCCCTTAAGATACAAACTCGATTTGACAGGTGCAG 34777 29 100.0 36 ............................. TCGTTTATGACCTTATGAAAGAGTTAACACCTCGAC ATC [34768] 34709 29 100.0 36 ............................. CTTCCTACTTTTTGACATAAAAAATAAGCCGAGTTG 34644 29 100.0 36 ............................. AAGTTCAAAACCTCCCACACCCGCTATGAATAAATT 34579 29 100.0 37 ............................. TTCGTAATTTTACGATTATACTTTTTAGTCAAATTAC 34513 29 100.0 35 ............................. GTAACAAGTAGTGTTATACCTGCAACAATACCAGT 34449 29 100.0 36 ............................. TGGAAATGGGAAGAAAGAAATGCACTGATTGTAGAG 34384 29 100.0 36 ............................. GTCCACATCGACAATAAAAAACACATTGTATCACTT 34319 29 100.0 36 ............................. CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT 34254 29 100.0 34 ............................. TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG 34191 29 100.0 34 ............................. AGAAAAAAAACATCTTTCCAATTTGTTGTTTTGC 34128 29 100.0 37 ............................. ACAAGTGCTAGAACAGAAGTTATAATTTGAACATTAC 34062 29 100.0 34 ............................. AGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTA 33999 29 100.0 36 ............................. TATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGA 33934 29 100.0 37 ............................. AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG 33868 29 100.0 36 ............................. GTGTAATTCTTAATTCCGTATTGATTCGCTAGTTTT 33803 29 100.0 35 ............................. TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT 33739 29 93.1 0 .......................C....C | A [33714] ========== ====== ====== ====== ============================= ===================================== ================== 21 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : GTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACTCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTCTCCGCCATTCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGTGTCTGTACTTTCTTATTCGCAAGTAGTTCTTTCTCCACACCAAACGTCTTGGCTGCAAGGTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTCCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [3-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //