Array 1 55096-52994 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADRGW010000007.1 Porphyromonas levii strain DD18 JD30_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 55095 33 97.0 33 ................................T TCTTCCTGCACTTGCTCAATCACGACAGGCGCA 55029 33 100.0 34 ................................. CTCAGATCCTTGTCAATATGGACAAGCAGATGCG 54962 33 97.0 34 ................................T TGCTTTTTGCAATACCTCCCGAACTGTCTTACCA 54895 33 97.0 35 ................................T CTGGGTAGTAGTAGACTTGCCCTCCGCCGTGTGGT 54827 33 100.0 33 ................................. GTACTTGACTCTGGAGTACTAGCAATCTATTCA 54761 33 100.0 35 ................................. ACGATGGTTATCCCTTTTCTGAAGGTTTTGTAGGT 54693 33 97.0 34 ................................C CTTGACTACTATCTTCGTGTTGTCGTTAGATACG 54626 33 97.0 35 ................................T GGTTGGTAGGCTTTTACACCTACCAACCAAGTTGT 54558 33 97.0 33 ................................T TTAGTAGGTGAATACATAAACCCCATGTTTGCG 54492 33 100.0 33 ................................. CGTATGTGAGCGTGTAGGAGTGCTCTCTAGGAT 54426 33 97.0 33 ................................A CCTCTAACTCTAGCCCTAGTACCTCACACACTA 54360 33 100.0 33 ................................. TGTTTGCTTATCAGTAAGCACGCTATAGCTATA 54294 33 100.0 34 ................................. TACCTCCATTGGCATTGAAGCGGTCAATCATTGA 54227 33 97.0 34 ................................A TCGCATAAGTTTTAATAACGTACCTAGCGAGTTC 54160 33 97.0 34 ................................T CTTTCCATAGATTGTATATGCAAAGTTAAACTAT 54093 33 97.0 34 ................................A CAGCTCAGTTCAAGCACTCTTTCGGTCAGTCCGA 54026 33 97.0 33 ................................A TAGAGTTCGGAGAATAATACCTATATCACTATA 53960 33 100.0 33 ................................. AGTTTGACTGCCTTGCAGCATCGGCGGAGTGGT 53894 33 100.0 34 ................................. CCTTGAGGTTTACACCTCCGGTCATCCTCTTAAT 53827 33 97.0 33 ................................A TTAGTGTAGATACATTAACGTTCTCGCCAGCGA 53761 33 97.0 34 ................................A GGGAATATAAGTACACAGAGGAGGAGCAAAAGGA 53694 33 100.0 33 ................................. AGTTTAAGAAAACTGGCAAGCTTCACTTGTCAC 53628 33 97.0 35 ................................T TACATCTTGACCTGATGGATAATTTTTGTTCTTGT 53560 33 100.0 34 ................................. CAATTGCACCTCACGCCCCTTGCGTGCTAAGGTC 53493 33 100.0 33 ................................. GTGCAATAAAGAAAGGTGACCTAGGAGGATGGG 53427 33 100.0 33 ................................. ATGACACCGTTACACCTCTGCCAACTACTCCAA 53361 33 100.0 34 ................................. CAGAGCTTATCGTATTGATCACCATCTGCCCCGG 53294 33 100.0 34 ................................. CAGAGCTTATCGTATTGATCACCATCTGCCCCGG 53227 33 97.0 34 ................................T GCGCTCAACCCTGACATCCTACGCGATTACGACA 53160 33 100.0 34 ................................. TGTAAAACCATCATCTCTCCACCAACTTCAAAAC 53093 33 97.0 34 ................................T CTTCATCTATTTCTAGAGATAGAACATTACTTCC 53026 33 84.8 0 .....T......A....A.............TA | ========== ====== ====== ====== ================================= =================================== ================== 32 33 98.0 34 GTCGCACCCCACGCGGGTGCGTGAATTGAAACG # Left flank : TTTCATAATGAGATAAATATGTATATACTAGTAACATACGACGTAGCTACTTCCACAAAAAGTGGAGAAAGACGACTGCGAAAAGTAGCTAAAATCTGCCAAGACTATGGACAACGAGTGCAAAACTCTGTCTTTGAATGCTTAGTCACCCCTGCACAAAAGGTACAACTAGAAGCACAATTACTTGACGTAATAGATCAAGAGCACGATTCCCTGCGCTTTTATCACCTAGGCAGTAACTATGCTAGCAAAATTAAAACCCTAGGCAAGCAAAAAAGCTTTGATATCGAAGAAGAGCTGATTATCTAAAGAAAGAGTAAATGAATGATGAGGTGCGAACCTTAAGCAAGTAGCGAATCCCCTAGGTAATCGCACACACTATATTTCAAGGAGTTATAAAAGAAATATCTTTGGGTATTGAGGTGATGTCAGTCTGTAGGAACCCACTCGCGAAACATAGCTTTCAAAGTCATAAATAATCAGTATCTTTGTACTGAACG # Right flank : AAAAATCATTCGTCTCAAGTTTGCCTGAACAACCTCTATATCGATAAGCACCGAGGGGTAAGCGAGCGGCGGTCGAGAGTTCTCCGAGTACCCCACGGAGAGTTGCCCTGTATTCATACTCACTTGCCTAAGCGTAGGCACAGCCTCAGTGAGCTTGCTCTTGATGTCTTGATAAACTGTTTTCATTTCAACAACTCCTTTATGTCGTTAATAACTTCCTGCCGTATCTCTTGCGCCATCCGCTTAGACGCTCCCATAAATGGTCGCTTCGGCATGGCAAACTCTTTTTTGCCATAAACCTTAGCCTTAAGTCCATATTGATGCACCCTCGCATATGGGGCGGTATTCCTAACGACAATACCCTCCTTTGTGCGCGCATAGCTAAACGCATTGGAGAGATGCCCCGTTTCTCCAGAAAGGATTTTCGCCGTTGTGCGCGCAAGACTAAAGCGCCCGGTCTGACCGCTATGACCATACCAAGAGCTTTCAGGTTTGCATCG # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCACGCGGGTGCGTGAATTGAAACG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //