Array 1 94193-93005 **** Predicted by CRISPRDetect 2.4 *** >NZ_NKYJ01000013.1 Escherichia coli strain LH1 contig013, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 94192 29 100.0 32 ............................. CCGTCGGCAGCGGCGTTAAATGGGGCGCGCTT 94131 29 100.0 32 ............................. TGATAAATTGTCCGCCCTGGCGGAATACCTCA 94070 29 100.0 32 ............................. ACGGCTTCATGTTCTTGGTGATGGGGTTCACC 94009 29 100.0 32 ............................. AGTCTTTAATCAAAATGGATTTTTATAATGAA 93948 29 100.0 32 ............................. GGACAATGTGAAAAGCTTAATATTCATTACAT 93887 29 100.0 32 ............................. CGACGTTTTCTAATATCACCCAGCAATCAATT 93826 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 93765 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 93704 29 96.6 32 ................T............ TACAGTTTCCATAAATTCACCTCGTTTATATA 93643 29 100.0 32 ............................. ATCGGACGATGGCGATCGCAATCGCGCGGGAA 93582 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 93521 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 93460 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 93399 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 93338 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 93277 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 93216 29 100.0 32 ............................. GGATATAGAGCGGGTACTCGAGCGAAGCGGGG 93155 29 96.6 32 ...........................T. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 93094 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 93033 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.3 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTAGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAATCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 16299-14622 **** Predicted by CRISPRDetect 2.4 *** >NZ_NKYJ01000015.1 Escherichia coli strain LH1 contig015, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 16298 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 16237 29 100.0 32 ............................. AAAATAAATGATAATCAGACGGTTAGCAACGT 16176 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 16115 29 100.0 32 ............................. ACCTGAACGAAACGCAAAATAGTTTCTTTATG 16054 29 100.0 32 ............................. TTCGTTTTTCGCAGCATTAACTTTTTGCCGCG 15993 29 100.0 32 ............................. TATTCGTAGGGTTTGCGCCGGAAATAGGCGCT 15932 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 15871 29 96.6 32 ............................C AGGTCCTCGTCAGATACAGTAGTCACAACACC 15810 29 100.0 32 ............................. CACTGACAGTGAAGCTGAATTACAGGCAGAGG 15749 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 15688 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 15627 29 100.0 32 ............................. GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 15566 29 100.0 32 ............................. GCGACCACGCAGAGCGGCGACAACCTGACGTT 15505 29 100.0 32 ............................. CTATAGCAGCACTCCACCAGCTCGAGCAGCAG 15444 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 15383 29 100.0 32 ............................. TGGCAGGCCGGTAATATGAAAACGACAGAGCA 15322 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 15261 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 15199 29 100.0 32 ............................. CAGTTGAAGCGCTTTAAAAAATTCTGGACGGC 15138 29 100.0 32 ............................. AGATCGACATGAGCCGCCGCGCGACGAATAAC 15077 29 100.0 32 ............................. TACCGATAATCGGTACAAGATAGTATTTACAT 15016 29 100.0 32 ............................. GACTATCGCGGGCTGCTGAAATCAACCGGCGA 14955 29 100.0 32 ............................. AGTCGAAATGAGGCGCGTGTTCTGGAGGATAT 14894 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 14833 29 100.0 32 ............................. ACGTGGTCATGGGTGCTGCTGTTGCAGAGCCA 14772 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 14711 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 14650 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //