Array 1 39128-37838 **** Predicted by CRISPRDetect 2.4 *** >NZ_QLSE01000043.1 Streptococcus iniae strain QMA0131 NODE_2_length_105295_cov_137.238_ID_1582, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 39127 36 100.0 30 .................................... AAAAGTGGATAGATAGCAACAGAGACAGAT 39061 36 100.0 30 .................................... CTTTGGTGGCACTGGCAATCAATACGAAAC 38995 36 100.0 30 .................................... CGCAATTTTTGCAGGTATAGCTCTTGCAGT 38929 36 100.0 30 .................................... TAAGTTATTAGAGAAAAGAAGAATTGAACT 38863 36 100.0 30 .................................... TCCATAGTGCATTTATGACATCATCTTCTA 38797 36 100.0 30 .................................... TAACGGTATTTATGCAATGGATGAATACTA 38731 36 100.0 30 .................................... TAACTTATCAGGCGATGAAACAGGGTTCAT 38665 36 100.0 30 .................................... AAGCGGAACAGATGACAATATATGATTTTT 38599 36 100.0 30 .................................... GTGGCATTTTTGGAAATAGTTAGACAATTA 38533 36 100.0 30 .................................... AGGTGTCAAACTTATCACAGCTCTTGTTCA 38467 36 100.0 30 .................................... ACAATTATTTTATGTCAGATATTGATGAAT 38401 36 100.0 30 .................................... GTGTTCGCCGAATAAGTAGAATTAAGAAGC 38335 36 97.2 30 ..........................C......... CCTGCAAAAGATTCATATGCGATTAGTTAT 38269 36 100.0 30 .................................... CAAGTCTTGCAACAACAAGTATCCACTACA 38203 36 100.0 30 .................................... ATATATATCAATGGAAATACCAAAACGTTT 38137 36 100.0 30 .................................... TTAATTCCTTGGTTGTCAGTGTAATAGATA 38071 36 100.0 30 .................................... CGGTTTAGCTGCTCTTGAGAAGATTGTATT 38005 36 100.0 30 .................................... TTAGTATTAAATATAATATCAACACCTTTA 37939 36 100.0 30 .................................... TACAACAGTACCTATAAGTGTGGCTACACC 37873 36 75.0 0 ................T.....TG..T.T.TTT..G | ========== ====== ====== ====== ==================================== ============================== ================== 20 36 98.6 30 GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC # Left flank : AACCAGAAGTAAAATCAATGATCGAAAAACTTGCTGCAACTATTACCGAATTAATTGCTTATGAATGTTTAGAAAATGAGTTGGATTTAGAATACGATGAAATCACAGTTTTAGAGCTAATTAAGGCCTTAGGTGTAAAAATTGAAACTCAAAGCGATACGTTTTTTGAAAAATGTCTGGAAATCGTACAAATATTTAAATATTTAACTAAAAAGAAGTTACTAGTTTTTATTAATAGTGGAGCATACTTTACTAGAGATGAATTTGAGAAACTGTTAGAATATATTAGTTTGTCTAGTCAACCAGTCTTATTTTTGGAACCAAGAAAGATGTATGATTTTCCTCAATATGTTTTAGATGAAGATCTTTTTATGCTAACTGAAAATATGGTATAATAGTATTAAGAAAGACAATAGTAATTAAAAGGATCATCAAGATAGAAGTCTAGCTGAGACAAATAGTGCGATTACGAAATTTTGTAGAAAAAATTTAGCTACGAG # Right flank : GCAATATTTCCCATTTGAATAACTTACATATTCGGAAACCGCTTTCAAAAATAGTTTTTTTATGCTACACTGATAAAAAAGCTAAGTGAGGGCATTATGGAAAAAACCTTTTTTATGATTAAACCAGATGGTGTTAAGCGGGGGCTGATTGGTCAGGTTCTTGAACGTATTGAGCGTAGGGGTTTTGTGATTGAGAAGTTGGAATTGCGTCAGGCTGATGCAGCAATTCTGAGAAAACATTATGATTTTCTGGTTGATAAACCGTTTTTTCCAGAGATTGAGGCTTACATGACAAGTGGTCCTCTGTTGATTGGTGTTTTGTCAGGCAATCGTGTGGTCTCTTCCTGGCGTATGATGATGGGGGTTACAAATCCTAAAGATGCCCTGCCAGGAACAATTAGAGGAGATTTTGGGCAAGCGCCAGGAGACGATGGTGGCATTCAAAATGTGGTGCACGGTTCAGATTCTATCGACGCTGCAAGACGTGAAATTGATATCTG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //