Array 1 64468-61408 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXCC01000032.1 Moraxella catarrhalis strain T4 T4_NODE_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 64467 28 100.0 32 ............................ TTTGGCATGAGCATCTGAGAAATACCGCCTAC 64407 28 100.0 32 ............................ AGCCGCCCGCACACACACAAAACGCATATAAG 64347 28 100.0 32 ............................ TTTGGCTAAAATGTACCCACATTTAGGCATTC 64287 28 100.0 32 ............................ GTGGGGTCATACGCCCCAAAAATGATGGCCAC 64227 28 100.0 32 ............................ ACAAAGTCAAACACCCACGCTTTACTCACCGC 64167 28 100.0 32 ............................ AGCTTGCCACCGCTCAAAACGAGCTAAGCACC 64107 28 100.0 32 ............................ AATCAGGGGGCAAAGGACGCACGCCACAAATT 64047 28 100.0 32 ............................ CAAAAATGATGGCCACAAAGTCAAACACCCAC 63987 28 100.0 32 ............................ CTAGCCGCTGGCATCATGCTGACCGCTTTGAT 63927 28 100.0 32 ............................ GCTAACAGAGCTTTCAACTGTGTTAATGCGTA 63867 28 100.0 32 ............................ GAGCAAATACGCAAATTACCGCTCCGAATATC 63807 28 100.0 32 ............................ ATTTTCACGGTTCTGCTGACGCAACGCTCCCC 63747 28 100.0 32 ............................ GAGCTTTGACAAGAAAGCAAGAGCAATTAACT 63687 28 96.4 32 .......G.................... CAGTTGCATGGGAAGCGTTAACCAAGACTAAA 63627 28 100.0 32 ............................ GTCAAATCTTTTTGAGCTGATTAAACTTCAAA 63567 28 100.0 32 ............................ CTGCTAGTCGCATGAAAATTAACAGCAATGGC 63507 28 100.0 32 ............................ ACTGATAACAGCGACCAAAAAAAGAAAATCCG 63447 28 100.0 32 ............................ TGCCGTATCTTGAATTGAAAGCAAGTCCATTG 63387 28 100.0 32 ............................ AGTTAAAAAAATAAGCAGTTTTAAGACTTGCT 63327 28 100.0 32 ............................ TATATAGCGATACAGCAGATTTTATTGCGATT 63267 28 100.0 32 ............................ AAAACCTTGACACGGTCAGGATTTAGCACATA 63207 28 100.0 32 ............................ AAGTTTTCAGCGATTGAGCCGAATGTCCGCCG 63147 28 100.0 32 ............................ TTTAGATGATGATGACTTTGTCAAAGAAGTGC 63087 28 100.0 32 ............................ ATTATATTCGTTATTGGGTGCATTAGTTATAC 63027 28 100.0 5 ............................ TTAGC Deletion [62995] 62994 28 100.0 32 ............................ CAGTATTAATCCGTCTTCTTCACGACCGCACA 62934 28 100.0 32 ............................ TGACGAATCTAGCCGTATTCAGTATTTAGCAT 62874 28 100.0 33 ............................ TACTAGATGGTGCTAGAACTGAAGAACAATTCT 62813 28 96.4 32 ........T................... ATGAATATTGCAAATTCACAGATTTTTGATAT 62753 28 100.0 32 ............................ GGATGGGGTGCTATTTATGCATAGAAAAGTTT 62693 28 100.0 32 ............................ AAGATGGTAAGATTATTAGTCTAACCAATCAA 62633 28 100.0 32 ............................ AGAATACAACTGCTTAGTGTATTACCCAAGCT 62573 28 100.0 32 ............................ AGGTGGGAAACAAAACAGGGCTTTGTGCAGTA 62513 28 100.0 32 ............................ ATATGGATATAAAGATAAGTATTCTGATAAGT 62453 28 100.0 32 ............................ AAGCAAGACAAAACATTTGCTTTAGGTGAGTT 62393 28 100.0 33 ............................ GGCTTTTTAAAGAATTAAACCGTTGGACGATCA 62332 28 100.0 32 ............................ AGGTGGGAAACAAAACAGGGCTTTGTGCAGTA 62272 28 100.0 32 ............................ ATATGGATATAAAGATAAGTATTCTGATAAGT 62212 28 100.0 27 ............................ GAAGATCAGATCTATTATTGAGCGAGC 62157 28 100.0 32 ............................ AAACTTCGGTCGATTTTGACACGGTTGAACGC 62097 28 100.0 32 ............................ GTGATGATGTTGAAAAATATGGCAAGTTATTT 62037 28 100.0 32 ............................ TTATGACACGCTTGGCACTGATTTTAGTGATA 61977 28 100.0 34 ............................ CTGCGAAACTCGGTCATTCGCAAGTTTTGCAAAC 61915 28 100.0 32 ............................ AAACTGCCAGAGGTGTGCACTGGCAAGCCTTT 61855 28 100.0 32 ............................ ATGACGATGCTAACAGAAGAACAAGCAGATTT 61795 28 100.0 32 ............................ TCCAAAAACTCACACAGATAAAACGTGATTAA 61735 28 100.0 32 ............................ TTAGCAAGTCTTAAAACTGCTTATTTTTTTAA 61675 28 100.0 32 ............................ AACTGCTTATGGCTGGATTATACCAGTACCAC 61615 28 100.0 32 ............................ ACTTGATTTAGTAGCTAAGCTTGATGTGTCAA 61555 28 100.0 32 ............................ GCCCTCAAAACTGGTTTGCAGTAGCTGATGTG 61495 28 100.0 32 ............................ CCGGTTTGGGATTGCGAAAATGGATAGATGTT 61435 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 52 28 99.9 31 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACTCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : TTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTACAGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCCGCGCGCGCCAATGCCGAAAGCTATAATGCCCAACGCCGCATGGAACAAGAAACCGATAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAATCTAGAGCGCGCCATTAAAGATACTGAAGAGACAGGTACAGATGACGCATCACTTAAAGGCATTCGCCTAACACATAAAGTACTGCTTAGCATCCTTGAGAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATACA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 188-40 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXCC01000055.1 Moraxella catarrhalis strain T4 T4_NODE_60, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 187 28 100.0 32 ............................ AGCCGCCCGCACACACACAAAACGCATATAAG 127 28 100.0 32 ............................ TTTGGCATGAGCATCTGAGAAATACCGCCTAC 67 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 100.0 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : ATTTGGCATGAGCATCTGAGAAATACCGCCTA # Right flank : AAGCCGCCCGCACACACACAAAACGCATATAAGCTTCACG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [30.0-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //