Array 1 231813-232998 **** Predicted by CRISPRDetect 2.4 *** >NZ_NABE01000040.1 Salmonella enterica subsp. enterica serovar Newport strain R9_3267_R1 NODE_2_length_359520_cov_0.991701_ID_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 231813 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 231874 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 231935 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 231996 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 232057 29 96.6 32 ........A.................... TCATGCTTTCGACTAAATACTACCGCGACAAC 232118 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 232179 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 232240 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 232301 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 232362 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 232423 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 232484 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 232545 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 232606 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 232667 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 232728 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 232789 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 232850 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 232911 28 96.6 32 ............-................ GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 232971 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 249668-251222 **** Predicted by CRISPRDetect 2.4 *** >NZ_NABE01000040.1 Salmonella enterica subsp. enterica serovar Newport strain R9_3267_R1 NODE_2_length_359520_cov_0.991701_ID_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 249668 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 249729 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 249790 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 249851 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 249912 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 249973 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 250034 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 250095 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 250156 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 250217 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 250278 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 250339 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 250400 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 250461 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 250522 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 250583 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 250644 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 250705 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 250766 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 250827 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 250888 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 250949 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 251010 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 251071 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 251132 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 251193 29 100.0 0 ............................. | A [251220] ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //