Array 1 6753-5231 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMHD01000220.1 Acinetobacter baumannii AB_1594-8 AB_1594-8_221, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 6752 28 100.0 32 ............................ TAACGTGGTGTGAGCCGAGAACCTGCAAGCCA 6692 28 100.0 32 ............................ TTTTGATGAGCAGGTATTTACACAATATAAAT 6632 28 100.0 32 ............................ TGATCAAGAATGATATGTACTAGCTCACTATC 6572 28 100.0 32 ............................ TTCGAGTCATAATTATAGTAAAAAGTCATCTT 6512 28 100.0 32 ............................ TACATAAAAATGCGGACCCAACGATAAGGATT 6452 28 100.0 32 ............................ ATTAATCGAGGAAAAAAAACATGAATGTTAAT 6392 28 100.0 32 ............................ ATCACTTAACCCATCATCAATAAGTTGGCCTT 6332 28 100.0 32 ............................ AGTCACCATTGTTCGAAGCTGTTGGGTCATTA 6272 28 100.0 32 ............................ TTGTTGCATCATTTGCGACTCATGACTATTTG 6212 28 100.0 32 ............................ AAATACAAAGTTAGGTATTGGTACTGGTGAAA 6152 28 100.0 32 ............................ AATATCCACCAATGATTTTGGTAAAGATAGAG 6092 28 100.0 32 ............................ AGACACATACGTAATGGTGTCAATATCGTATA 6032 28 100.0 32 ............................ TGCCCCAGCGAGCAAACGCCTTAAAAATCCTG 5972 28 100.0 32 ............................ GAGATTTTTGTGCGCTTATAGAACATGAGCTT 5912 28 100.0 32 ............................ GTAGGGATAGTGAGATTGTAGACCTTACAATG 5852 28 100.0 32 ............................ CCGCAGATTTACGGATGCCTGTAACTGTCATG 5792 28 96.4 32 ...A........................ TATCATGAACATTGTTCCTTGACCCACGGGCA 5732 28 92.9 32 ...A.....T.................. ATTCGATAGACTGATTCTATAAGCTTATTTGC 5672 28 100.0 32 ............................ TGTTTCGCGTTGAGGTCCGGGTAATCGCCTAT 5612 28 82.1 27 ....C......TCC..........T... GTCTTGTATCCTGATTTCAAAGATTCA 5557 28 92.9 32 ....C....T.................. AAACAACGAGCCTTGTCGCGGGTCGCCCATGT 5497 28 96.4 32 ...A........................ CAAATCAAAAGTGCAGTTGCTGCCTCAATAAC 5437 28 96.4 32 ...A........................ TCTTCATCTGTTACATATGAAGCAAGGATCTT 5377 28 92.9 32 ...A.......T................ GTCAAACGACAGGGCTATAAACACTTAATCTT 5317 28 96.4 31 ...A........................ ACATTCAAAGAGGCTCATCGAATCCAATCGA 5258 27 78.6 0 A..T........TC........C.-... | A [5254] ========== ====== ====== ====== ============================ ================================ ================== 26 28 97.1 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : TTTAAAAATAGAAGCCGTTTTACCTGCATTTGCCTGATAATCGGTTGGAATAAGGAAGTCCTCATTTAATAAAGTTCGAGCACTAAGATAGGGTAAATCAAGTGCTTGCTGTTTACTTAAACGAATCCCGCCTTTTTCAATATTGGAGTTAATCGTCTTTAAACTAAAGTGTACTGATTCTTCTAAAGCGTTTATAAAAATATCAGTTTGTGGTTCAGGCATTATCTTCCCCGTTTTTGTTATCTAGCCAATTTTTAACACATTATTTGAAAAATGAAAGTATTGAAGGTGAGAGCTGCGACAAATTAAGTCGTAAAGACAATTGGATGAAAATATTATATGCTTCATAAATTTAGCCTAAGACGATTAGGTTATATTTTTATAAAATTAGAAAAATTAATATAATTCAATAGATTATATTGTTCTTCTATTTTGAAGGTTTTTAATTCATTAAAACTTTATATTATTGTTTTTAAGAGTTTTGTTTTTACTTAGCTCTA # Right flank : TTTCTCTTTCGAAATTTAAAACGACATGTTTTGTCGTTAAAAGGCCGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAATATTATATTTTTATTACATTCGAACTTTAACAATAAACTATGCATGTCATTCTCATCTCTGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCGATTGTGGATAGCTATGCTATTCGTACAGGACATTCATCTTGGCAAGCACCAATGACAATGGAAGGTTTAAAAGAAATTCGTAGCGCATTAAAAAAAGTAGCCACCCGACAAACTGCGGTAGCCGCTTACATTAATTTTGGTGTACGCAGAATGAAGCTTGCATGGGTTGTAGGAGCAAAGCATAAATTTGCAAACGATGGTGCATATCCAGTTGCATCGACCAAAAAACAACAAAAACTACTAATGCTAGATGAATGGGTCAAAGTAAGTAGCTTGTTGGCAGGTGCAGCAGGGGACATGCATGATATCGGTAAGGCCT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [19-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 11843-14632 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMHD01000220.1 Acinetobacter baumannii AB_1594-8 AB_1594-8_221, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 11843 29 100.0 31 ............................. GTCTTTGCCAAGTATGTTAAAGACCCAGCAC 11903 29 96.6 31 ............................C TATTTATTTAAAAACATTAAACGATTTAATT 11963 29 100.0 31 ............................. ACTGTAGTGGGTCATAAGGAGATTTAGTTAG 12023 29 96.6 31 ............................C AACATATGGAATTGCAGCAACCGATGCATAA 12083 29 96.6 31 ............................T AGTTCATCAAATGAAACTAACGCTTCCCATT 12143 29 100.0 31 ............................. CTCAGGCAATTGTTGGGAAAAGTCGATTTCT 12203 29 96.6 31 ............................T GTTTCAAGGTCTCGGATAATTCCACATTCAT 12263 29 100.0 31 ............................. TATACATCGTTATTGCATTCTGCATATCCCA 12323 29 100.0 31 ............................. TTAAGAGAGGCTTGTTTAGATCAATACTTGC 12383 29 100.0 31 ............................. TAACAGGTCAAGTTACTGTTGACCCGGTAAA 12443 29 100.0 31 ............................. TAACCAAAATGAGAATAAAAAATTCTTTAAA 12503 29 96.6 31 ............................T TCACCTGTAGTAACAGTTGTTAGATAACCCA 12563 29 96.6 31 ............................T CTGGAGTCATGGGGGCTAATTTATTTAAACG 12623 29 96.6 31 ............................T TATCCCTCGATCTGCTGTAACGTGGTGTGAG 12683 29 96.6 31 ............................C CAAGGTGTGCGCACCAAAGCAAAACCAATCT 12743 29 96.6 31 ............................G CCCACAGGTTGAGCATCAACGGCCATCGAGA 12803 29 100.0 31 ............................. TCATAGAGCTCACTTTGTCGTTGAGCCTGCA 12863 29 96.6 31 ............................T TGTAAAACCTCTGGATTAAGCATTGCGTTCA 12923 29 96.6 31 ............................T CTTCCTGAGTTTTAATCCCATTTGCCTTACA 12983 29 96.6 31 ......T...................... AAATGACCATCAATCGACAGTGGTTTACCTT 13043 29 96.6 31 ............................C ATCTTCGCCAATTGCTTTTGGAGAGTTGCTA 13103 29 100.0 31 ............................. GAAGGTGCAGAGTTTTGGGACTTTGGGTGGT 13163 29 100.0 31 ............................. ACACGTTCTCTATATCGCTGTTTGCGGTCAT 13223 29 96.6 31 ............................T TCAGTTGGATATGCCTTTGATACCAAGAAAC 13283 29 96.6 31 ............................T CTCCCCCCTCCTCGATCGGCTGTGAAAGTAC 13343 29 96.6 31 ............................T TTAAATCGTCATATTAAGGCGCAGTTCCGAA 13403 29 100.0 32 ............................. AAGATCTGACCAGCTAAAACATTCTGGTTATC 13464 29 96.6 31 ............................T AGAAGCAGAAAATATCCAACTCATTGCTACT 13524 29 100.0 31 ............................. CATGGGAGCTTTCATTCATATATGTCATTAG 13584 29 100.0 31 ............................. CGTCCACGGTAGCGGCGCCAAGGCTGCCAAT 13644 29 96.6 31 ............................T GTTTTGCTAATTTATCAATATCGATTTTCAC 13704 29 89.7 31 ...AC.......................G GTATTAGTGCGAATTGGCTTTTAGCCCACGC 13764 29 89.7 31 ....C.......G...............T TAAATGCTCAACTACTTCTGTAGCTAATGGA 13824 29 86.2 31 ...GC........C..............T CTCAACTCATTGATTTTTTCTTCTCTTGCCA 13884 29 93.1 31 ...GC........................ TTTTTATTCCAAGGGCTTTTGCTTCTTGTGA 13944 29 86.2 31 ...GC......T................T TCAAATGATTTAATGAGCTTGTAGCCATTTT 14004 29 86.2 31 A..GC.......T................ CGTCTTCTAATGATGGACTTTAATCCAATAT 14064 29 82.8 30 A..GA.......TC............... TCTCACTGAAGATATGACCATCACTTTCTT 14123 29 75.9 31 CG..C.......CC......C.......T TTATAACCACCAGTTAAAGTATTGACTAAAA G [14125] 14184 29 75.9 31 ...GC.G...A..C.AT............ CAATCGGGGACGTGGTCAAAAAGATTATCAG 14244 29 93.1 31 ....A.......................G TGTTGATGTTGTTGTTCAGATCGTTTTTGGT 14304 29 79.3 31 ...GC....T..TC..............G ACATGCGAGCTTTCATTTAAATGTGTCATCA 14364 29 93.1 31 ....G........C............... TTAAAGCATTTTCATATGAGCCTTCCTCATT 14424 29 82.8 31 ....A......TCC..............T TCGGATCAGTCCAGTCATCATTCTCGTCAAT 14484 29 86.2 31 T..G........G...............T ATTATTGCGCGACAGAACGTATCAATTAATG 14544 29 89.7 30 ...GC.......................C AAGCTGATGCTTCCTTATGGTTACAGTCAG 14603 29 82.8 0 .G..C...................AT..T | G [14607] ========== ====== ====== ====== ============================= ================================ ================== 47 29 93.9 31 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : ACGTTGGGCCAAAACGCTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAGTTTATTCGTGATGAAGGCAAAAACTCTCATGACCCTATTGCGGATATAGCCAACAGCTACCTTGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGGATGGGAATTAGCTTTGCCTTACCTATTTTACACGGTAAAACACGTCGTGGAGGTCTAGTCTTCGACCTCGCTGATCTAGTTAAAGATGCTTTTGTTATGCCAGTCGCTTTTACATGTGCAGCAAAAGGATTAAATCAAAAAGAATTTCGAATGCAACTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGATATATGTAGTAAAATCAAATAAAATCATATATTTAATCTAAGTACCTCATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : TTTGAATCTTAAAAGAAAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAATTTTGGTGATGGCGTCAATTGAACAAATATAATAATATACTGATTTATCTTAATTAATTTTTATAAAAAAATCCCAGTGTACATGACAGTGTACAAATTATATGTTGCTGGCCTATTTCCTTCGGGTTTGGTTGCTATATACGGAGTACAACTCATGTATTAAACACCTTACTGGCAATCCAGTAACACTACCCTACTCCACCACTTACACAGCATCACTTCGACATCTCGTCAACGCAATTTTGCGTTCGGCATTGTTTTCAAAAGTTTATCCAGAATTAGACGCACCTAAAACCCGATAAAACCCTATCAACTCTTATCATTAGCTCTTAATAAAACGTAGTCTTTTATCCAGGTAGCTACTACGAATTTCTCGTAGTAAGGCACTGTATTTGAAACATGGAAATGAGATTCCTTAAATTAGCGATAAACCTTGTTGTATATAG # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.35, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-57] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //