Array 1 496129-497986 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHNN01000004.1 Salmonella enterica subsp. enterica serovar Albany strain CVM N51278 N51278_contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 496129 29 100.0 32 ............................. GATATGGGGCTTGATCTTGATTTATTTAATAC 496190 29 100.0 32 ............................. GGGATTGCGGGAATTAGTATTAAATCCGGCGT 496251 29 100.0 32 ............................. GAATTGCGGGAATTAATATTAAATCTGGCGTC 496312 29 100.0 32 ............................. ATAATCAGGTCGTTAATATTTTTGGTCGCCGC 496373 29 100.0 32 ............................. CCCACGCGGCACAGCTGGCAGAGGACGAAATG 496434 29 100.0 32 ............................. CGCTGGTGTACGACATCGCCGACATGATCAAA 496495 29 100.0 32 ............................. CGCCTCGCAAAACTGGTCGGGGTTTTTCCCCA 496556 29 100.0 32 ............................. TTGCGTCAGGTCGTCGTTTTTTGAGAACGCCA 496617 29 100.0 32 ............................. CTAAATAAAACCTGTAATTGCTCCCAATCGTA 496678 29 100.0 32 ............................. AGGGGCAGCTCCTGGTCGATGAGGTTCTTGAG 496739 29 100.0 32 ............................. CCGTCGGCCTGACAGCCACAGCAGTCAATACA 496800 29 96.6 32 ............................A TGCTGGTCACGCCCGGTTTAGCGGGTAAATTC 496861 29 100.0 32 ............................. TCACGGGGTCCGACGCGGATGTAATGAGTTAT 496922 29 100.0 32 ............................. GCGTTGGCGTCGCCCAACACCATCGCCGGGGC 496983 29 100.0 32 ............................. TTACTGGAACTGTCACTATACGTGGAACGTCG 497044 29 100.0 32 ............................. ACAACCGTCGTTTTCTCCACGACGTCGAGAAG 497105 29 100.0 32 ............................. ATCTCCGGCACGTGCGATAACGGGTCTGATTA 497166 29 100.0 32 ............................. CGACCCAGCGTTACGCGGTAATATTTCGCACC 497227 29 100.0 32 ............................. GACGTTGATTTACACGGCAAAGATACGGAATC 497288 29 100.0 32 ............................. GTACTGGCCTATTCCACATACAGTGGCACGCG 497349 29 100.0 32 ............................. TAGCTTAATCACGGTGCGTCCCTCCTCCGTTC 497410 29 96.6 32 ...C......................... ACCTGATTGAGGTAATCATGAAAAAAATATTA 497471 29 100.0 32 ............................. GCTGGAGCGCAACTGCCAGTGACTACAGAAGC 497532 29 96.6 32 ............T................ AGCACGCCACAGCGCGTAACTGTCGCAATAGA 497593 29 100.0 32 ............................. CGTCTTATCAGGATACCTGCAAACAGATGTTG 497654 29 100.0 32 ............................. ACCCCCCATTTACTGTTATTGTAGGGATAGCC 497715 29 100.0 32 ............................. CGAGCGCGGAATGATTTTTAACGCTGAGATGG 497776 29 100.0 32 ............................. GCTGGAATGGTACGGCTTACCAACTTCCCTGA 497837 29 100.0 32 ............................. TGTTTGCCATTCTCTCGCGTGCTGAGGGAGAC 497898 29 100.0 32 ............................. ATTTGCGTCAGACTACCGACAGGGGCTGGTAT 497959 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGATGATAAAAAATAGTTTATAAACAACAATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 514544-517442 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHNN01000004.1 Salmonella enterica subsp. enterica serovar Albany strain CVM N51278 N51278_contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 514544 29 100.0 32 ............................. CGAACACTGGCTTAAGTGCCATTGCTGGAAGT 514605 29 100.0 32 ............................. CGTCATCATACCAACTGCTGGTCGATACGATT 514666 29 100.0 32 ............................. ATAACAGCGGCCACAATATAAACAATGGTTAA 514727 29 100.0 32 ............................. CATTCTGACTAACGCCACCACAATTGCCGCTA 514788 29 100.0 32 ............................. ATGTCAGCGCAGGAGATGGCGGCGACTGCTGG 514849 29 100.0 32 ............................. CGCCGCCCCCATCACAGCACCCCGGCCAGCTT 514910 29 100.0 32 ............................. GTCTTGAGCAGTGGGCGCAAGAGTCTGGTTAT 514971 29 100.0 32 ............................. GAATCGCGGGAATTAATATTAAATCTGGCGTC 515032 29 100.0 32 ............................. CGGGCATTTGCCCGCTTTTCATTACAGTGATT 515093 29 100.0 32 ............................. TTCTGGCAATGGTCTTATTTTTTGAGGTTTAG 515154 29 100.0 32 ............................. GTCACGTGCGGTTATCCTGCAATTTCTGACGA 515215 29 100.0 32 ............................. GTTTACAGCCTGAGCAATGCCGGAATGAATGA 515276 29 100.0 32 ............................. TATTTCAATATTCATTCATTGCAGGCGTAGGA 515337 29 100.0 32 ............................. ACGCGAGCGCCGGTAGTCAGCACATCATTAAA 515398 29 100.0 32 ............................. CATAACCATAACCAAATTGGGTTAATGGCGCC 515459 29 100.0 32 ............................. CCAGCCTCTTCAACGAGTTCGAGAAACGCGGT 515520 29 100.0 32 ............................. TCTGGTCGTCCGAGGCTGAGGCCGAGTGGCTG 515581 29 100.0 32 ............................. CGCACCTGCCGGGACATGACCCTGCCGGAGCT 515642 29 100.0 32 ............................. GCGTTTAAACGCTTTTTTGATATCGGCTTCAG 515703 29 100.0 32 ............................. TTAGAGTTGAAATTGATGGCATTGAACTTGGC 515764 29 100.0 32 ............................. TACCAAAGATACCGCCGCGCTGCTTTCTGGTA 515825 29 100.0 32 ............................. GCATTGCCTGGCTGAGTCCGTCGCTAACTGCG 515886 29 100.0 32 ............................. TAGCTTCTTTGTTCGTGCGGGGCGGATTATGC 515947 29 100.0 32 ............................. CATAATTTACGCGGCCCTTTTTTGGTCACCCA 516008 29 100.0 32 ............................. CGAATAAACAGGCCTGTAACGCGCTCCAGCGT 516069 29 100.0 32 ............................. GCTCCGCCTTGAAAATAACATCTGACATTGTG 516130 29 100.0 32 ............................. TGCCGGGGTTCTGCAGTCTCTATTTTCCTCGC 516191 29 100.0 32 ............................. GAGCTGATAGAGGCCAACCCGGACGCAAAAAT 516252 29 100.0 32 ............................. TGCACATACATCCTCACTTACTGGGTCTGACA 516313 29 100.0 32 ............................. AGCTGTTCGGCGTGGCGGCGTAGCGCCTCGGG 516374 29 100.0 32 ............................. CTGCTGATGTAATGGCCGACGCAGATGCTGTG 516435 29 100.0 32 ............................. AAAGTTGACACAATAGCGAAATCAATTACTGA 516496 29 100.0 33 ............................. TTGTTGCAGGCGGGAGAACGCAGCGCGTACCCC 516558 29 100.0 32 ............................. GCGACCTGCTCGACAGCATTCAGTTTGTTGTT 516619 29 100.0 32 ............................. TGATCCAGCCACTTAAACAAAATGATCCACAT 516680 29 100.0 32 ............................. GGCCACACCGACAACCGCAACGGATACAAACA 516741 29 100.0 32 ............................. CAGCCGGAACGACAGCAGCGACAGCGACGTGG 516802 29 100.0 32 ............................. ATATTATAAAAAAAATAATAACCTCTCAGAAA 516863 29 100.0 32 ............................. GTTTGGTTCATCCTGAACGGCGTTCGTGGGGA 516924 29 100.0 32 ............................. CGCCCGCATGATGGCGCGGTTACTTAATGTCA 516985 29 100.0 33 ............................. CGGTATGCTATTGACAGGAGTGAGATTTTAGAT 517047 29 100.0 32 ............................. AATCTTCAGAGGACTCAGATCCTGATTACGTT 517108 29 96.6 32 ............T................ TTGATTACAGTAAAATTTACGTTTATTCAGTC 517169 29 100.0 32 ............................. AAATCTCCACCGTGGATATTTCGGTTATTGGT 517230 29 100.0 32 ............................. ATGTGCGCATTATTGCTAACCATAGAGACTCA 517291 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 517352 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 517413 29 100.0 0 ............................. | A [517440] ========== ====== ====== ====== ============================= ================================= ================== 48 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGCACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //