Array 1 28538-20866 **** Predicted by CRISPRDetect 2.4 *** >NZ_QNUG01000024.1 Epilithonimonas hispanica strain KCTC 22104 CONTIG0024, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 28537 47 93.6 30 ...TCA......................................... ATCTGCCGAATATTGATTGGTGTATAGTTT C,T [28526,28530] 28458 47 100.0 30 ............................................... AGCACGGATGATACAAACAAAGCAATTGCC 28381 47 100.0 30 ............................................... AACTGCGAACTTCTCCTATTTGTTTTGCCT 28304 47 100.0 30 ............................................... ATAATTTCTCATCTTGAAAAAGAGTTTCTC 28227 47 100.0 30 ............................................... GACTGTTGCATTAGATGCTATTACAAAAGG 28150 47 100.0 30 ............................................... CTTACTTGGATTAACGCTACGGAGGACTTT 28073 47 100.0 30 ............................................... AAAGGACAAAAAGTGTTTGTCGCTTATGCT 27996 47 100.0 30 ............................................... GATTCTGGTAAAGTTGCAAGCCGGACAGTC 27919 47 100.0 30 ............................................... GATGATCTAAAAGTTTTATTACATAGCTGT 27842 47 100.0 30 ............................................... TTATTATTGAATGGTACCATTTGATTTACT 27765 47 100.0 30 ............................................... TCGAAACTTACAGTTCCAGCATTGTAATTA 27688 47 100.0 30 ............................................... GCACCTTCTTCGCGGTGCGTGATGAGATTG 27611 47 100.0 30 ............................................... ATTTTTTTTCATATCCCGATCTATTTTATC 27534 47 100.0 30 ............................................... ACCACGCAGGCAGGGCAAGTCACAATTAAA 27457 47 100.0 30 ............................................... AAATGTTTCCACCAGATGAGAAAGAGCTGA 27380 47 100.0 30 ............................................... CCCCTCGGTGATTGCCCAGCACCAACAGCA 27303 47 100.0 30 ............................................... CGCATTTCGCCCCGAAATTCTGGGTACTAA 27226 47 100.0 30 ............................................... AAGAAATTATTAGAAGATTGTTTAAAAGGA 27149 47 100.0 30 ............................................... AAGTAATGAAATCCTGAGTTTCTACATTAT 27072 47 100.0 30 ............................................... TATCAATTGTTTTTTGATACCCCTCAATCG 26995 47 100.0 30 ............................................... TAGCAGCCAAAAACAATAATCCAATTATAT 26918 47 100.0 30 ............................................... GTTAACTGACCAAAGTCCAGATGGCGCATA 26841 47 100.0 30 ............................................... CAATATCTATCCTGTGTCCGTTGACGGATG 26764 47 100.0 30 ............................................... CAAAAGATAGTCAGGGAACTGGAGAACTTC 26687 47 100.0 30 ............................................... CGTTACTTTTGCAAGAAAATAATGAGAATA 26610 47 100.0 30 ............................................... CGTCGTCTCAAACTCGACGCACTCGGGTTA 26533 47 100.0 30 ............................................... CTCTTCGGAAAGTTCTTCCTTCGTTGGTAA 26456 47 100.0 30 ............................................... GCTCAGGTAAAAGCCTACGAGGATATCACA 26379 47 100.0 30 ............................................... AATAATAGTGGCGATAGTAGAGTAAGTTTA 26302 47 100.0 30 ............................................... GGTTAGAATTGTAAATCGTCATCGTCATCA 26225 47 100.0 30 ............................................... CATTCCTTGTCGGTGACTTCTCAGTATATG 26148 47 100.0 30 ............................................... AAAAATAACAGCAACACAATTTAGACTTAA 26071 47 100.0 30 ............................................... AGGATGGATTAATTTAGAGAATTATACCGA 25994 47 100.0 30 ............................................... GCCATTCAGATATGCATATCGATAACAATT 25917 47 100.0 30 ............................................... TTAAAAAAGAACATAACGAAAATTTTTATA 25840 47 100.0 30 ............................................... TATTTATCCTAAATTAGTAGAAATTATTAC 25763 47 100.0 30 ............................................... GTCTCAGTTGTGGTAGGAGTTTACGTTTGG 25686 47 100.0 30 ............................................... CAAACGCGAAATAAGCCCCTGGCATCGCCT 25609 47 100.0 30 ............................................... GAGCTGTTTTTGATTTAAAAAGAGATGCTG 25532 47 100.0 30 ............................................... TATCAAACTCTAATTGTAAAGAGGTAGCCT 25455 47 100.0 30 ............................................... AGAAACAGAAACAAGCCCAGAAAGAAGCTG 25378 47 100.0 30 ............................................... TGGCGATGCTCCTAATGAAATCTCTACTAC 25301 47 100.0 30 ............................................... AATCGTGCATTACTTCTATTTGGCATTCAA 25224 47 100.0 30 ............................................... TATGAGAAATGCTGATAGAGTTTCTGATAT 25147 47 100.0 30 ............................................... TTATGCTTAGACAGGAAATTGAGATGTTAG 25070 47 100.0 30 ............................................... TAATAGCCACCGACAATGATTTAAAAGGTG 24993 47 100.0 30 ............................................... ATTATCAAAATTTTCTGTTGCAAATATTTC 24916 47 100.0 30 ............................................... TTTTTGTTTGCCAATACCGACAAAAAGCGT 24839 47 100.0 30 ............................................... ATTAACGCCAGCGGAAAGAGCAGATAAAGA 24762 47 100.0 30 ............................................... GTCTTAGAAGCTACCGCACCGCTTTCTGCT 24685 47 100.0 30 ............................................... ATCTCGAACATCAGCATTAGGGGAAGTCGT 24608 47 100.0 30 ............................................... AAAACTATTTTCTACGAATATTGTTCTGAA 24531 47 100.0 30 ............................................... CAAATCATCTTTAGTAGCGAATATTTTATT 24454 47 100.0 30 ............................................... TCGATTCTGATTTTTCAGTTGTTTCAGTTT 24377 47 100.0 30 ............................................... TTGCCGACAAGTCAGATTCAGAGTTCGGCA 24300 47 100.0 30 ............................................... TGAAATATTTCACTAAGCCAGATAATGAGT 24223 47 100.0 30 ............................................... ATTGTTGGGAACTTGAATGCGATAAAGCTT 24146 47 100.0 30 ............................................... ATTTAACCACTTCAACATTAAATGAAGAAT 24069 47 100.0 30 ............................................... CATAATGCACTCTTATATGATTTATACGAC 23992 47 100.0 30 ............................................... AAATAAAACGTATGGAACACATTAAAGGAG 23915 47 100.0 30 ............................................... ACAACTTCTCCCTCATTGCTATAAAGGTGT 23838 47 100.0 30 ............................................... ACCTATTACCGAAAACGAATGATAGAACTC 23761 47 100.0 30 ............................................... GGATTTTGTTCATTTTCCAACAAACCGTCA 23684 47 100.0 30 ............................................... TGGCTATATAAACGGGCAAAACATATGTAT 23607 47 100.0 30 ............................................... AAATTCCAATTGGTTAATCGCTCCCGTTAC 23530 47 100.0 30 ............................................... CTGACATTTTTCGGTCGATAACTTCTGACC 23453 47 100.0 30 ............................................... TTGACGAATTCGATTCAAATATTGAGAATG 23376 47 100.0 30 ............................................... TTACCCCGCTGATTATAATTCTGTGATATA 23299 47 100.0 30 ............................................... TCTGGATTAGACGCTAAAAACATCAATTTA 23222 47 100.0 30 ............................................... AACAATAATATATTTTGATGTTCGTTGTGA 23145 47 100.0 30 ............................................... CTTCCACATTGGTTGATGCATTCAAAGATT 23068 47 100.0 30 ............................................... CAAGTTCTTTTGCTTTTTCTTTTGGTGTCA 22991 47 100.0 30 ............................................... TTAAAAACCCTTACATAAAAAAGGGTAGTT 22914 47 100.0 30 ............................................... ATTACGCATTCTTATTAAAGGAGCTTAAAA 22837 47 100.0 30 ............................................... TCATGTTCATTTAGGAACATCTGATGACGT 22760 47 100.0 30 ............................................... CTTCAAATATGGGGTTACCAGCCTTTAAAG 22683 47 100.0 30 ............................................... TGGAGAATTGAATAATCATTTTTAAGGATT 22606 47 100.0 30 ............................................... TAAAAAAGGATATTATACTCAGTTTGCGTG 22529 47 100.0 30 ............................................... CTAAATGGGCGCACCGAACTCACCTACCCC 22452 47 100.0 30 ............................................... AATCTTCTTTAATGTTTTCTTGATGTACAG 22375 47 100.0 30 ............................................... AGAATTTCCCGGAATACTTTCGTTGCTTTG 22298 47 100.0 30 ............................................... GAAACATTATTATCAATACCGATATAACAT 22221 47 100.0 30 ............................................... ATTTTGAAAATCATCATCATTATCATCTTC 22144 47 100.0 30 ............................................... GAAACTTCTATCTGGAGAGTCCGTGAAATT 22067 47 100.0 30 ............................................... GGGGAACTAAACAGGGCAAGAAGTTAGCGC 21990 47 100.0 30 ............................................... AAGAATATTGGGGAGAAATAAGACCGATTG 21913 47 100.0 30 ............................................... TAATCCAAAATTCTATAATTGGCAAGCGTT 21836 47 100.0 30 ............................................... GTTAACTGACCAAAGTCCAGATGGTGCATA 21759 47 100.0 30 ............................................... ATACTGGTTTTAACAGGCGGTCAAAGAGCC 21682 47 100.0 30 ............................................... TTTATGATGGTTTTTCTGGTTATAATATTA 21605 47 100.0 30 ............................................... CGATCTCGTCAACATTGGCACCAACTGGCA 21528 47 100.0 30 ............................................... TGGAATGGCGAAAATGCATTTTATTTGCGT 21451 47 100.0 30 ............................................... ATGAAACATTGGTTTACAGCAGAAGATGCA 21374 47 100.0 30 ............................................... TTGATATTCTATTATTTAAGAATGAAATAT 21297 47 100.0 30 ............................................... TGGGAACAAGAATTCCCAATTATCAAACCG 21220 47 100.0 30 ............................................... AATTAAAATCCTTTCCCGAGTTGATGAAAA 21143 47 100.0 30 ............................................... TTTCAAAACAACTTCTTCGTTTTGACCGTT 21066 47 100.0 30 ............................................... TCATTCAAATTTCAAATGAAGTTTATTTTT 20989 47 100.0 30 ............................................... TTGATTCGATTCATAAAGAAGTTCAAGTTC 20912 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 100 47 99.9 30 GTTGTGAATTGCTTTCATTTTTCAGTATCTTTGAGATACAACACAAC # Left flank : CTAAAAAAGCACAACGAGATTATATCATCGATAAGTTGAAAGAAACAATTCAAAAATTATCCGATAAAAATGAAAGTGTAATTCTAATGGGCGACTTCAATGAAAATCCTGATAATGAAGCTTTGCAAGGACTGCTTTACAAGAATAACGGAGAGAAAATCCTGAGTAATCCTTTTGAAACATTCTTCAAAAACAATCAATTCTCTACTTATCACGGTAAGAAAGGGGTTTGTTTTGACCAGATTATTTACACTGAACAATCGCTGATAGAACAGTTCAAATTAAGCAATATCCAAGCAGAAATCTACAACTGTCCCCGACTTAGAAATAAAGACCAAAAGAATAACAAATATCCTCATCGCACCTACTCCGGCTCACGGTACATGGGTGGATATAGTGATCATTTTCCGGTAGTTTTGAGGTTAGAAAAATGATGTTTTGGGGTTGTCTTAGAGTCATCTATTTTTCTATTTTATTCAAAATAAAGTTCAAAAAAGCAT # Right flank : CTCAAAACTTAACCCTCTGTTTACCAGAGGGTTTATTATTGTTCTAGAATTATGAAAATATTAGTTTTTGAAACTTCTATATTAATACAACGCAGGTTTTTATTTTCTAAAGATCAGACTGCTTCGTTCCTCGCAGTGACAGGTTATTAAAAAAGTTCGAGCTGTTGGAAAGTCGGTGGCGGTTCTTCTTTGTTTCGCGCAAAAAAGATTTCAATATCTCCAAATTGTTTGTCGGTGATGCACATAATAGCGACTTTTCCGGCTTTGGGAAGCATAAATTTCACTCTTTTAATATGCACTTCAGCATTCTCCCGACTCGGGCAGTGGCGTACATACATCGAGAACTGAAAAAGCGTAAACCCATCATCTATCAGCCCTTTACGGAACTTTGTAGCATCCCGCATATTGGCTTTGGTTTCGGTAGGAAGATCATACAATACTAAAACCCACATAATTCGATAAGAGTTAAACCTTTCGGCATCCATATTTTTGATTGTAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCATTTTTCAGTATCTTTGAGATACAACACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: R [matched GTTGTGAATTGCTTTCATTTTTCCGTATCTTTGAGATACAACACAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.40,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //