Array 1 12818-10809 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABIIH010000098.1 Yersinia similis isolate MW332-1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 12817 28 100.0 32 ............................ ACATTGAGAGTGGTCACCAGAGTCATCACTGA 12757 28 100.0 32 ............................ GTGTATTCATCAGCATCAGGTCGGTTCTTCAT 12697 28 100.0 32 ............................ CCCAGTAAAAGACCGAATTAACTCAGTTAATG 12637 28 100.0 32 ............................ AGCTTCATTACCGCCCATGCCACCAGTTGGAA 12577 28 100.0 32 ............................ AAAGGCGGTCATGGTGTTGAATTGGTGATGCA 12517 28 100.0 32 ............................ TAATCCATTGCTGAATGCGGAAGGTAATTCGG 12457 28 100.0 32 ............................ TCACATTTACCCCGTGTCGCATTAATCTCACC 12397 28 100.0 32 ............................ TGCTTTCTGCATGATTCCTTTTAAAATTGCTC 12337 28 100.0 32 ............................ TAGGGGGCGATATAAAAATAAGTCGGCAGGGG 12277 28 100.0 32 ............................ ACCCAGTTACGGAAAGCATCGTGACCAAAGAA 12217 28 100.0 32 ............................ CAATACTGCGACTCGACAAAAACCCGCAATTC 12157 28 100.0 32 ............................ ATACTTACAGCTTCAAAGATGTTTATAACAGC 12097 28 100.0 32 ............................ ACCGAAACGCAAGCCAGCAGCGCCGCGTAAGA 12037 28 100.0 32 ............................ TACCCGCCGCGCCGGAGAAGCCGCTATGAATA 11977 28 100.0 32 ............................ AACAACAGGTTGGCGGGAGCTAGATAATATTA 11917 28 100.0 32 ............................ CAAGATGCCATCGACGCTATCTGTGAACCCAT 11857 28 100.0 32 ............................ CCTGCATCATTCACACACTTCACCGCTCGCTA 11797 28 100.0 32 ............................ TGCGTAACACCAGCGTTCGCCGCCGCTGCTAC 11737 28 100.0 32 ............................ GGAAGGGATGAAATTAAAGGCTCACGATACAA 11677 28 100.0 32 ............................ GTCAATTAGCAGGTCAATCACTCGCTCAGTAA 11617 28 100.0 32 ............................ ATTTTGATTAGTCTGTTCACTGACCGGCTGGC 11557 28 100.0 32 ............................ ATGAAAGCGCTAAAACTGGCCCAGCAGTGCAT 11497 28 100.0 32 ............................ ACCATGAGGTTACAGAAATGACTCTAGAAGAA 11437 28 100.0 32 ............................ TTAAAAACAAATATGCAAACTTGGAGGCCGTT 11377 28 100.0 33 ............................ CTGAATATCACCATTCCACAGCAATGTGGCTGC 11316 28 100.0 32 ............................ GGAAACATCTTTCACCGATAACAACCCTTGCT 11256 28 100.0 32 ............................ TTCACAATAGCCGTTATGACGTGATGCTTATT 11196 28 100.0 32 ............................ AGCAAAAGACGGCTTTTTAGCATCGGGGGCAA 11136 28 100.0 32 ............................ AATTGTTAGAACAAGTAACGAATCGGCCTTTG 11076 28 100.0 32 ............................ AGGTGAAAACCATAGAAACCGGGCCGCTTTTT 11016 28 100.0 32 ............................ ATATCAGATGGCGCTAAAACCTGAGTTTTAAA 10956 28 100.0 32 ............................ TGATAGACCAACTGGAAGCGGCACAAGATGAT 10896 28 100.0 32 ............................ AATCTACCTGCTAGTCAATATCTCCCGCGTAA 10836 27 85.7 0 ...................A.A-.T... | C [10812] ========== ====== ====== ====== ============================ ================================= ================== 34 28 99.6 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATTGCTGCCCGCGGCGCTGGAGGGTGGCCAGAACTACACGGTGTAGCACCAGGTGGATCACCACAGAAATCAATAAGATTAGCCCAATCACCATCGTCAATGACATCACATCGGAGAACTCCATCCCCAATCTTTCCAGCCACTGGCTTATTCTTTGTTGCATCATTGCTCCTTTAAAACATCAATCTGACGAAAAGGCCTTAGCCTAAAGGCTATGGGCGCAGGGGGGGCACCTGTTTACCCTTTTTTACATTGTGGTTCTGTATCTTTGTTCGATTGTTGCCCAGCAAAGGGGGAGACATATTTATATGCTGTGGTTTATGACATGGTTTGTGGGATTGTACTGTGGTTTTATTATGAGTTATGTTCTGACCCTATTTTTTTAGCTACTGCTAACTCATTGATTTTTCATTGTAGTTACCGGTGGTCTAAAAAAAGGGTTTTTTCCCTATTAGCGAAAGAATTATTTTACAAACAGGATGTTATCGTATTATCTTACT # Right flank : TCCTGGACCATGCTCTGATGCTATTTGGGGATCAAAATTGCGAGCGGAAGCGCATTTTGTAACTGACAACAGGGATAATGGCATCTTTTATTACTGACTTTATGAGTATTAGAGTAAGGTAAATAGCAGGTGGCATATCAATATATACCCGTCATACTTCAAGCTGCATATGTGTTGGCTGCTTTCGTCCTCCCAGTAACTTACTGGTGTAAGCTCTTGGGGATTTACTCAGTTGCCGCCTTCTTGCAACTCGAATTATTCTGAGTATAGAGAGAGTTATTTTTTGGAATAATATCCACTTGGTACCTAAATAAAGCGCTAACGGAAAAATAGCGCGGTGGATATCCCTCTAAGGAGTTTTATTTCCATGGAAAATGCTATTCATTCCTCTGATTTGAAAACGATCCTGCATTCAAAACGATCCAATATTTACTATTTAGAATATTGCCGCGTATTGGTTAATGGGGGGCGAGTTGAATATGTCACCGATGAAGGTAAAC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 27573-27184 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABIIH010000007.1 Yersinia similis isolate MW332-1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 27572 28 100.0 32 ............................ AATTCGGATGCATAAGGCATGGGATTTTGCCA 27512 28 100.0 32 ............................ ATCTATCAGTTACTCAGGTAACACCGTTACAT 27452 28 100.0 32 ............................ AACTTTAGCGATAGCATAATCATTATCAGCAA 27392 28 100.0 32 ............................ ACAGCAAAGAGCATGTTTGGTTAAAAAAATGT 27332 28 100.0 33 ............................ CGGATGCAATGGCTATCGCAATGGCGTTGTCTA 27271 28 100.0 33 ............................ AGCAACTTGCAGAGTTGAAAGCGTTGGAGCCGG 27210 27 78.6 0 ...G.............T...CC.-.T. | ========== ====== ====== ====== ============================ ================================= ================== 7 28 96.9 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TAGGCTAGAAAAATCAATCGAGGTGATGAACCCTGGCAGGTAGACTATCAACTCGTCGTGGGAAAATACCGGATAGCGGATAATGCCGCCCGCACCAAGCAATGCCGCACCTAATCCGCAATAGACGATACCGCGTAACCGCACCAATTAGCCAAGAGTAGAGACCCACAGCCCCGGCAATGGAAGCAATTTGGCTGGCGGCAACCAACCGGAACCCTAAATAGCGCCCATTCCAATAAACGTCAGGTCGATGAGCGCCAGCTGTTTTTTAAATTTGCCCTGGACAGGCCAGAAACATTGGCCGCAGCTCCGCTGTTCTCCTCAGAAGAATAATCATTAGGATCCGGTTACATCCCCATAGATTCTTGTGACCCTCTTTTTTCCACTATTACTAACTTATTGATTTTTATGCTTCTCAGGTGTTTCACTAAAAAAAGGGTTTTTACGCATTTTTCGCAATTGCTAATTGATAAATATCAGCTTATCCGTATTATCTTACT # Right flank : ATCTCAGCTATCTGGCGGCGCTTTATCTGCAAATATTAACTCACTAATCCCTTGGCATATTCAAACAACGCTTTTAGCAGCGCAAGTTTCTCTTTATCGTCTTCATACTGGTTATAAAATTGTTCCAGTTGCAAAACATAATCTTGTACCCGTTCAGGGCTAAGCGCTGAACGGCGATGCTGTAACCAGCGCTGTTGCTCACGGTCATTCAAGGTATTCGGGTAGTTACGGGCGCGGAAGCGGAATAGCAGGGCCTCCAACCGTGGGTCCTGAAATGTCAAATCCAGTGCGGGCAGATTTTGTGGCTCAGTTTGCTGGATAATCTTCATGGTGGCGCGGTCGGCATCACTGAAAAAGCCGTTATACAACTGTGTATCCACATCATCGGCAACCGTGAATGGCTCCGCTTGTGCAAACAGCGCGACCACTCTTTCACGCACCTGTGGGTTTTGACGCAGCAGTTGCAGATTTTGCAAACAACGCTGGCGATCAATCCCCAA # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //