Array 1 206163-205890 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAIGB010000006.1 Salmonella enterica subsp. salamae serovar II 1,13,23:z29:e,n,x strain HZ243 NODE_6_length_263536_cov_33.670516, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 206162 29 100.0 32 ............................. CCGTTACGGGTTAACAGGTCAATATCTTTACG 206101 29 100.0 32 ............................. TCTAAAACTTCCTGAAATTTACGCTCTAGTGC 206040 29 100.0 32 ............................. TGTTGTTTTTCTGACGGGATGACGCGTTGGGT 205979 29 100.0 32 ............................. GCGGTGTTAGCGGTGCTTTATTATCGCGGAGT 205918 29 93.1 0 ...........................GT | ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GGCACGTTGGATCAGGCGATGATGGCGGTAATGCCATTTAAACATAACAACCTACGGTTACTGGGCCTTAGCAACAAGATCTTACTGGCGGATGAGATCCATGCCTGTGATGCCTGGATGTCCCGAATACTCGAAGGTTTGATCGAACGGCAGGCCAGTAATGGCAACGCCACTATTCTGTTATCCGCGACGCTATCGCAGCAGCAGCGAGATAAGCTGGTGGCGGCATTTTCCCGTGGGGTGAGGCGTAGTGTGCAGGCGCCGTTGCTAGGCCATGACGATTATCCCTGGCTGACTCAGGCCACGCAAACAGAGCTGATTTCTCAGCGGGTTGATACACGCAAGGAGGTTGAGCGTAGCGTAGATATTGGCTGGCTACACAGTGAAGTGTCGTGTCTTGAACGTATAGGCGAAGCAGTGGAAAAAGGAAACTGTATCGCCTGGATACGTAACTCCGTTGATGATGCGATTCGTATCTATCGCCAGCTTCAACTGAGTAA # Right flank : TTTTCACCAGCAGATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGTCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGACTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGACGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCGCTCATTCG # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 216332-215509 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAIGB010000006.1 Salmonella enterica subsp. salamae serovar II 1,13,23:z29:e,n,x strain HZ243 NODE_6_length_263536_cov_33.670516, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 216331 29 100.0 32 ............................. GAAAGCGGCGATATTTCCGGCGTATTGATCCA 216270 29 96.6 32 ............................A ATATGACATTTCGTCACGGTAATAAATTAAAC 216209 29 100.0 32 ............................. CTGGTGGAGCGCCGCGAGGAGTACCTGTCTGA 216148 29 100.0 32 ............................. CATCGGGTTAACGGTTTGTTCGTTCCCTGCCT 216087 29 100.0 32 ............................. GAATTACTGACCTGTACAAACGCTGTAGCGAG 216026 29 100.0 32 ............................. TTTGCAATCAAATAAAATTTTGTGCTTCCCTA 215965 29 96.6 33 ............................T AGGCATTTTCTACCCTGTTGGGTGCCAATACGT 215903 29 96.6 33 ...........................T. CGCTACGGCGCAACACGCGTCCAGTTCGACGGC 215841 29 100.0 32 ............................. GGCTACAAAATTGAACACGAACTGGAGTTCAA 215780 29 100.0 32 ............................. GCGCTGGCGGCGGAATGCGAGAGCAAAAAGAG 215719 29 100.0 32 ............................. GGTTCGCTTCCACTTTCCCCCGCTCATACGCC 215658 29 100.0 32 ............................. CGCGGGGGTGAGTGTGGTTATTCAGTTGGTTA 215597 29 100.0 32 ............................. GTGTGGTTCCAGGTCGTGCTCCGGGAAGGCCA 215536 28 89.7 0 .............C..........G-... | ========== ====== ====== ====== ============================= ================================= ================== 14 29 98.5 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GAAATTAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGTCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGCATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTACATATCGCCTGATGTATTATCAATCTTACGGACGGCCTGTCGTTGCCGTCTGTGACTCATCTATTACCTTGCATTGTCTATTTTCTCTATACGAATTTCGATGAGTGTATAAAAGCACTGATAAATTTTCCCATAGCGAGGCATGGATCACGCTATTTTGGTAAATTAAAAGAAAAAATTATTCTATGAACTTTTTTGCATCAAAATCAGTAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTACGTTGGTAGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAACGATATACATTTAGT # Right flank : TTGCATAATCATAATCTGTGTATCAGTAATGGCCGGTACAAACCTGTAAAGTAAAAAGGCCGCATTTTCCCAGGGAGGCTTTTATACAGGAGAAAGCCATGGCGTTAACGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCATTAAGGGCCAGACCAGGATTAAGCCTGTTGGTCCAGGATGAGTCTACGTCGATCTTGTTCGACACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACTTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCAGATATTGCGCGCGAACGCTATGCGGCAATGACTTTTCTCGGTATTACCCGAAGAATAAAAAAATTGTCGCGTGAGATAGACTATTCACGCTACCGAATGGTGTACACGCGTGACCCTCTGCTGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1271547-1269686 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAIGB010000001.1 Salmonella enterica subsp. salamae serovar II 1,13,23:z29:e,n,x strain HZ243 NODE_1_length_1374197_cov_28.854785, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1271546 29 96.6 32 ............................A TAGCGGTACGGGTTTTACCGGTACCGGTCGCC 1271485 29 100.0 32 ............................. AATTCACATTTAAGAAACTGATCAAGGACAGC 1271424 29 100.0 32 ............................. CCGGGCTTTGTGGTGATGAAATTCCGCTGTGC 1271363 29 100.0 32 ............................. CGGTTTCAGAAAACGCAGCGCAACACACTGCT 1271302 29 100.0 32 ............................. GACCCCCGGCAGACGATTGAATTAATCGATCG 1271241 29 100.0 32 ............................. CAGATCGAGGTTATGCCAGGTGAGCCGAAAGA 1271180 29 100.0 32 ............................. AAACGTGCCGCCGTCTGGTTAATCAGGATGGT 1271119 29 100.0 32 ............................. CGATTGCCGCCGGGGTGATCTCCCTCTATATC 1271058 29 100.0 32 ............................. CCTGGATATCTCTAATAAAGGTCATTTTCGTT 1270997 29 100.0 32 ............................. TAATAGGTAAATTGTGAATCCGACAACAGCAG 1270936 29 100.0 32 ............................. CTGTCCTGCATACGCTCTACCGCGCGCGCACA 1270875 29 100.0 32 ............................. AAAAAACTATTACTCACCGCCGCGCTACTGGC 1270814 29 100.0 32 ............................. GCATTGGCCCTGTTTTTGATGCGCTTCCGGAT 1270753 29 100.0 32 ............................. TGGAGTGAGAGCGCTAACCTTTCTGATTGCCC 1270692 29 100.0 32 ............................. TCGCACTCACCTCTCTCGCCACAAAACCACCT 1270631 29 100.0 32 ............................. CCGCTGATACTGGTTCAGATGCGAACGGTGCT 1270570 29 100.0 32 ............................. TGAGTATGGTGAACCCTCATCTGTCACCGGAT 1270509 29 96.6 33 ............................T GGGTATTTTTGGCAAATTATCAGCGGCCATCGC 1270447 29 100.0 32 ............................. CCAGTATAGATGCCCACGCATATCTGTAAGCA 1270386 29 100.0 32 ............................. ACAACGTATTCAAAAAAATAGACTCCAGAGAC 1270325 29 100.0 32 ............................. GTGGAAATAAAATCATCAATCATCTCAGGCGT 1270264 29 100.0 32 ............................. CAGGCATTTCTGGCGAAGTCGTCCATGTTGAC 1270203 29 100.0 33 ............................. GAGAGCGAGTCGCCGGCGGCTATTCAGGACAGC 1270141 29 100.0 32 ............................. CTTACGGCACGGCCATAAAGCTGGCGCTATCA 1270080 29 100.0 32 ............................. AAAAAATACGAATTAGTAACTGAATTATCAAA 1270019 29 100.0 32 ............................. CGGAGCGTCGTAAATCGTGGCGTTCTGAAAAT 1269958 29 100.0 32 ............................. GCCGCATCAACGCCAAACGGTTTAAATCCTCC 1269897 29 100.0 32 ............................. CGCCCATATACCGGACCAAGAAGTTGACGGAT 1269836 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGCT 1269775 29 100.0 32 ............................. CGGATCATATAGGTGAGGATTTCCTCTTTTTT 1269714 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.8 32 GTGTTCCCCGCGAGAGCGGGGATAAACCG # Left flank : TGCTGTTCCCGTTCTCGCGTCTGGTGCATATCTGGAGCGTGCCGGTTGAGTATCTGACCCGTAAATATCAGCTTGTTCGCGCACGTCACTGATTGTGTGCTGATTATCTCAAGCCGCCGTGGGGCTGAGGCGTATTCAGCACTATAGCGGGAAAATAGCGCGGGCATGGAGATTGACTTCATGCCCGTTTTTTTGCATTTCCTATCGGGCTCATCCCGTATCTCACGACCTGCCGCAGACGCTCCCTTGAGCTCTTTGCCGACGATATGCGCAAAATCTTACTCCCCCTTGATGTGATGATGTATTAATCTCCGAGTTTTCCGTCATATGACACTCGGCATAGTATGTTGGTAGATTTTAAGAGAGAATCATGGGTGTGGTTTTTTATTATATGAAATCAATTGGTTATATGCTCTTTAATAATGCGGTATTGTTATTTATGTGTTGGTAAGATGTTGCTGCATGAAAATGTTGTTTATAAACATAGGGATGGCACTAGA # Right flank : GTCAGGAGGTGATTCACTTGGTACTGGCTGATGTGTTCCCCGCGCGAGCGCTGAGTTTGTGGGGTTAGTTCACTCCGGCAGGTTTTTTATGGCTGTTTGCCGGATGGCGGCATAAATGCCTTATCCGGCACCGATCTTATCTCGGAGTTGCATCGAACCTTCTCATCCTTCCCCGTACGGAGAGATATGAGGCAGTGTGCTTAATGGGGATAATATACGCGACGGAAGTGATGGTGGTGGGGGAAGGATTATTCGTCGCTCCGCTCCTCACCCTTCGGGTCGTTGCCTGCGGCAACGCTTTCTCGCTGCGCTCGAATCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGTACGGAGAGATATGAGGCAGTGTGCTTAATGGGGATAATATACGCGACGGAAGTGATGGTGGTGGGGGAAGGATTATTCGTCGCTCCGCTCCTCACCCTTCGGGTCGTTGCCTGCGGCAACGCTTTCTCGCTGCGCTCGAATCGAACCTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGAGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGAGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //