Array 1 44-2008 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDKR01000032.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STM188, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 44 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 105 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 166 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 227 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 288 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 349 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 410 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 472 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 533 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 594 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 655 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 716 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 777 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 838 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 899 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 960 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 1021 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 1082 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 1143 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 1204 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 1265 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 1327 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 1388 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [1430] 1430 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 1491 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 1552 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 1613 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 1674 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 1735 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 1796 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 1857 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 1918 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 1979 29 96.6 0 A............................ | A [2005] ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGTG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 17506-16196 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDKR01000081.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STM188, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 17505 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 17444 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 17383 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 17322 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 17261 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 17200 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 17139 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 17078 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 17017 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 16956 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 16895 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 16834 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 16773 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 16711 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 16650 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 16589 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 16528 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 16467 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 16406 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 16345 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 16284 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 16223 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 22 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //