Array 1 1756-1516 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQIU01000019.1 Neisseria meningitidis strain M22960 M22960_CHA4080A97_cleaned_ctg_7040, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ================================================ ================== 1755 26 100.0 48 .......................... CGGCTTGTTCGGTTTCGGTTTTTTTTGAGGTTTCGGGCAACTTCTAAA 1681 26 100.0 42 .......................... TAGACCTTAGAACAACAGCAATATTCAAAGATTATAAAAGAC 1613 26 96.2 46 ..............T........... TAGAACGTAAAATCTAAAGAAACCGTGTTGTAACGGCAGACCGATG 1541 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== ================================================ ================== 4 26 99.0 46 CCGTCATTCCCGCGCAGGCGGGAATC # Left flank : CATTTTGGGCGTATTGGAAAATATGTCCGTCCACATCTGCACCAACTGCGGACACAGCGAAGCACTGTTCGGCACAGACGGCGGCAAAGATTTAGCCGCACGCCTCAACGTCCCCCTGCTCGGACAGCTTCCCCTAAGCCTGCCCGTGCGCGAAGCCATGGACGGCGGCACACCGGCGCAACTGTTCGACGAACACCCCGCCATCGCCCGAATCTACACCGATGCCGCATTCCAAATCGCCCTGGGCATTGCCGACAAAGGCAAAGACTTCAGCAGCCGGTTCCCTAAAATTGTCGTCGAATAAAGCCGCGTCCGAAACCGCAACAGCAATGCCGTCCCAAGCCCCGCGCCTGCCGGCGGGCAAACTTGCCGGATAAAACGGTTTTTTTGAGATTTTACGTTCCGGATTCCCACTTTCGTGGGAATGACGGAATGTAGGTTCGTGGGAATGACGGGATTTGAGATTGCGGCATTTATCGGAAAAAACAGAAACCGCTCCG # Right flank : CAGACTGTCGGGCATCTGCAGCGGTTTGCTAAAAAACGCTTTACCGTGATCAGTGTGCAAAGTTAAAATGGGGAGGTAAGCTTTTCAACCAGCAATTCGGCGGGCGCGGGATCGGGCGGTTTGCCGAATCCCGCCGTTTGCGGCGCGCCTGCCGCCGACGGTATCCCGCGAAGCAAGATTTAAGGGATAAAATATGTTCCAACACACAGGGCGGCACATAAGGCGCCGCCCTGATTCGGAAGGGCTTGCACCCCTCCCGGACAAAGCCTGATCCTGCCGCCCCGAAGGGCGGGGGGTTTGACCGAAAAGGAAATACGATGAATAAAACTTTAAAAAGGCAGGTTTTCCGCCATACCGCGCTTTATGCCGCCATCTTGATGTTTTCCCATACCGGCGGGGGGGGGGGGGCGCGCAGGCGCAAACCCGTAACTACGCTATTGTCATGAACGCGCAAAACCAGCCCGAGGTACAGTGGAATGGGTCATATTCAATAAAGGACA # Questionable array : NO Score: 2.81 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTCATTCCCGCGCAGGCGGGAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.00,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 29267-30622 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQIU01000019.1 Neisseria meningitidis strain M22960 M22960_CHA4080A97_cleaned_ctg_7040, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 29267 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 29333 36 100.0 30 .................................... CTCAACATTGTTGTAATCTGACCGCAACGC 29399 36 100.0 30 .................................... ACTCCCTGTTTATCGGTTTTTCAGCTTAAA 29465 36 100.0 30 .................................... CTGAAGCCTCTCTTTTAACGCCATTTTTAT 29531 36 100.0 30 .................................... CGATTTACCACCCATAAAACCACCTCAAAA 29597 36 100.0 30 .................................... TAATTTGCGTTTCGTGTCGCTCATAAACCC 29663 36 100.0 30 .................................... GCCCACACGCCGCCTAGCACGCCGCCGAGA 29729 36 100.0 30 .................................... GCCCCTGCTCGCGCACCGCCGCAACCTGCC 29795 36 100.0 30 .................................... CCCGCTGCTGCGCCTATTCGCACTCGACCG 29861 36 100.0 30 .................................... GGCAGCGATGGTGTCGATTTACTGGCATTG 29927 36 100.0 30 .................................... ATCAGCAGCGGCAACTCGTCGTGCCTCAAA 29993 36 100.0 30 .................................... TTTATCTACGTTTTTCAATGTTAAACATTT 30059 36 100.0 30 .................................... AGTTTTTAAATTTTTGATTTTGATTTTTTT 30125 36 100.0 30 .................................... ATAAGATGGGAAAATTACCATGAGGCCTGC 30191 36 100.0 30 .................................... CTTGATAAATGCTCCCCTGTTCTGCTAGAG 30257 36 100.0 30 .................................... TAGGTCTGTACTACTCCGACGCATTCCCAT 30323 36 100.0 30 .................................... CGGTTTCTTTCTCTTGAACTTCGTCAAACT 30389 36 100.0 30 .................................... GCAGGCGGCAACGTGAAGAAAGGCGAGAAA 30455 36 100.0 30 .................................... TCGTCCCTGCCGCCTCTGCAGGCCGCGTCA 30521 36 100.0 30 .................................... TCTTCCAGCTTGGCGATGCCGTCTGAAAAG 30587 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 21 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGATATTGTGCTAGAAGAAACAGAAAACGAGCAGAACAATGATTTCAGGCTGCCTGAAAATTTAGAACACTTTGATATTCAAATAGAAAATGTTTCTTTTCGCTATGCTGAAAATGAACCATACATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCATTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCAGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //