Array 1 189829-187908 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCNZ01000073.1 Salmonella enterica strain NGUA-1_S1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 189828 29 100.0 32 ............................. TTTTTTATAAATCTGGCGAACCTGCACCCCCT 189767 29 100.0 32 ............................. CTCTCAGCCCCTCCGGGGCGCCCCGTGATAAT 189706 29 100.0 32 ............................. CATCCCCCCTCTTTTCCCCGGGTGTTTGTTGG 189645 29 100.0 32 ............................. ACGGTAGGAATATTCACGTTTTTTAAATCGGA 189584 29 100.0 32 ............................. ACGTGACCGCCGAAATGATTGCGGAAATCGCC 189523 29 100.0 32 ............................. CGCGCCCACCGTTCAGCCCTGGAAAAAGCGGC 189462 29 100.0 32 ............................. CCGCCTTCACCCAGCCCGCCGGACATCTGATC 189401 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 189340 29 100.0 32 ............................. AAATTTATGAGGAAAATTATGTCAGACAGTAA 189279 29 100.0 32 ............................. AGGAGTTGTTAGGCCAACTGTATAACGATTTA 189218 29 100.0 32 ............................. AGATGACCATCCCACCAAGCAGGCGAAGAAAA 189157 29 100.0 32 ............................. GTGCCGCTGATTTTCGTAACGCCTCAATGTAT 189096 29 100.0 32 ............................. AAAAAACAATGGTTTTACCGTCCGGCTGAACA 189035 29 100.0 32 ............................. CCGATGATCCAGAAAGTCACAAATGCGAGGAG 188974 29 100.0 32 ............................. AGGGGTTCAGGGGCGAGCGGGCGTTAAAGCGC 188913 29 100.0 32 ............................. CAGACCAGGGAGTTTCTGGCCGAACTGGAGAG 188852 29 100.0 32 ............................. ATGTGCGCATTATTGCTAACCATAGAGACTCA 188791 29 100.0 32 ............................. GGCGACGGCACAAAACGCTCAAAACTCATAAC 188730 29 100.0 32 ............................. TGTTGGCTGGTAACCACCGCAGATCGTCACCT 188669 29 100.0 32 ............................. ACCAGGGGGTTTTTTCCACGTATCGCCGCTGC 188608 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 188547 29 100.0 32 ............................. CCCTTTATCTTAGCCGCCAGAACCAGAACGCC 188486 29 100.0 32 ............................. GCCCCGATAGCGTCAACTACCAGGGCCTGCAA 188425 29 100.0 32 ............................. AATTCTTTTGCTTGCGCGTCGTTCATATCGAA 188364 29 100.0 32 ............................. GACAATCAGGGGGCGCTGGTTGACAGTATTAA 188303 29 100.0 32 ............................. TTAGTCAGGACGACTTTTACGGCTATGTAGGC 188242 29 100.0 32 ............................. CCGTAATGCTTTTATGTCCTCGCTTCGCTGCG 188181 29 96.6 32 ...................A......... GAGGTAAAACTAACTGGCCGCGTTGTCCGTCA 188120 29 100.0 32 ............................. TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 188059 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 187998 29 100.0 32 ............................. TGATATTTTTGGTTATTTGCGATTTAGTTTTT 187937 29 100.0 0 ............................. | A [187910] ========== ====== ====== ====== ============================= ================================ ================== 32 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCTCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 209564-207461 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCNZ01000073.1 Salmonella enterica strain NGUA-1_S1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 209563 29 100.0 32 ............................. AGAAAGATGCGTACGTTCAATGTCGAGCTTTT 209502 29 100.0 32 ............................. ACTGGCTAATCACGGTTAACGCCGTGCCGGTG 209441 29 100.0 32 ............................. CGGCCGGACTGATTTAACGAGGGGAATTTATG 209380 29 100.0 33 ............................. TTTTATCGTCGTAGCCTATTGCTAACTTGACGC 209318 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 209257 29 100.0 32 ............................. TAATCTTTCAGCGCGTCCTGGCGGTCAACGAG 209196 29 100.0 32 ............................. TTGAGTGCCACGGCCAGAGCGGTAGCCATTAA 209135 29 100.0 32 ............................. AAAACGGGTTTGCGGAAGGCTGGAACGCCTGC 209074 29 100.0 32 ............................. GAGCGGATCCGGGATCGTCAGCACTCTGAACC 209013 29 100.0 32 ............................. CACGATTTTATGTGCCGCGTCGAGGCGTGGGC 208952 29 100.0 32 ............................. GCGACCAAACCATTCGGATTCCGTAGGGGACC 208891 29 100.0 32 ............................. ATTTCTTGCCTATAATTTCCGGTTCGACGCCA 208830 29 100.0 32 ............................. CACAGATCGCGAGTTTGCTGGGTATATCTGAA 208769 29 100.0 32 ............................. GGGAATGGCTGGATCTGGTGTTGGTTATTTGC 208708 29 100.0 32 ............................. CCGCCGCTGTTCTTCTGTGTCTGCTTTTGTCC 208647 29 96.6 32 ...C......................... GCAGTAATCCCGGGTATTCCGAGTTATATGAA 208586 29 100.0 32 ............................. GCGTCAACCAGTTCTGGCATACCCTCCTCTTC 208525 29 100.0 32 ............................. ATTAGCTGATAAATCATCCAACATGTCACTTA 208464 29 100.0 32 ............................. AGTCGCTGGCGGATGTGCGGCGCACCGAAGCC 208403 29 96.6 32 ..G.......................... CACATAACCCGGCGCGATGGCCGATACATCAT 208342 29 96.6 32 ..G.......................... CGAGAGATCATAGACCAATGGACTGAAAGACT 208281 29 96.6 32 ..G.......................... TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 208220 29 96.6 32 ..G.......................... AGTACGAGGCACTATTCGGCAAGAAACCGCAC 208159 29 96.6 32 ..G.......................... GGGGCATGTGCGAAATTTCGCTCCAGTTTGTT 208098 29 93.1 32 ..G.....................C.... GCTCAAAACTCGGATGGTATAGGCGTGGCGCA 208037 29 96.6 32 ..G.......................... GCAAGCCACAGCGCAAAAGAGGTCTATTCCTG 207976 29 96.6 32 ..G.......................... GCGCTTCCGCCAACTCTCATCCGTGAAACGGT 207915 29 96.6 32 ..G.......................... CGCCATAAACGCGACTCCGTCACACATCCGTA 207854 29 96.6 32 ..G.......................... ACGCGTTAAAACTGCGCTCAATGCAGACGGCC 207793 29 93.1 32 ..G........A................. CGGTTCGCCCGCTGCTCAGTCTCGCCGGAATG 207732 29 96.6 32 ..G.......................... GGGCATGAGTGCTACTGCTTTCAACCCGAAAG 207671 29 96.6 32 ..G.......................... ATAAATTATCGGGAAATCATAATCAGCGCCGC 207610 29 96.6 32 ..G.......................... AAAACCCTCAAATATGCGTAACGGGAGGCTGG 207549 29 96.6 32 ..G.......................... TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 207488 28 79.3 0 ..G............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 97.7 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGAGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.78, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //