Array 1 18283-16973 **** Predicted by CRISPRDetect 2.4 *** >NZ_CYAB01000002.1 Escherichia coli strain 202453_aEPEC, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 18282 29 100.0 32 ............................. GCATTACGGTAAATCGCTGGGGCTGTCCCGTA 18221 29 100.0 32 ............................. CTGGGGCTGCACATTGACAATAAACCGCCGCC 18160 29 100.0 32 ............................. ACTTGATTACCGCTATTTTCTGACGATTTAAT 18099 29 100.0 32 ............................. CCTGATAATTTACGCTATTCAGCGGAGATGAT 18038 29 100.0 32 ............................. TGGCTATAGTATCATATGATTTCTATTTGTCA 17977 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 17916 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 17855 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 17794 29 100.0 32 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 17733 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 17672 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 17611 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 17550 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 17489 29 100.0 32 ............................. GCAAATTAAGCTGGCTGGCAATCTCTTTCGGG 17428 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 17367 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 17306 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 17245 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 17184 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 17123 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 17062 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 17001 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATGGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 10179-11182 **** Predicted by CRISPRDetect 2.4 *** >NZ_CYAB01000019.1 Escherichia coli strain 202453_aEPEC, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 10179 29 100.0 32 ............................. TTGTGCGAACCTCAGTTATTGTGCCCTGACGA 10240 29 100.0 32 ............................. AATTTATTCGGTTTATTCCGTCGGCGCGCGAC 10301 29 100.0 32 ............................. GGGATTTGCACTCCAGTTGATTGACCCGCAGC 10362 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 10423 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 10484 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 10545 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 10606 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 10667 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 10728 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 10789 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 10850 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 10910 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 10971 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 11032 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 11093 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 11154 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //