Array 1 115048-116204 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_FIHH01000001.1 Streptococcus suis strain LSS60, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
    115048	    36	 100.0	    30	....................................	GTTCGACTATTAAAGTCGATAAAGGACGTC	
    115114	    36	 100.0	    30	....................................	TGTTGATGATATATATAGCTATCATGGTTT	
    115180	    36	 100.0	    30	....................................	TGGCTATGGAACTGAAGATAGCTAAATTAC	
    115246	    36	 100.0	    30	....................................	CAGTCCAAGCCTTAGAAATTGCTCCAGGAA	
    115312	    36	 100.0	    30	....................................	GCTTAAAGTAAAAGATATGCTTGCCACCGC	
    115378	    36	 100.0	    30	....................................	TGCGTGTCGCGTGAGAAGGTTGAATACTGC	
    115444	    36	 100.0	    30	....................................	TAATGCAACTACTAATAATGGTTGGACTTT	
    115510	    36	 100.0	    30	....................................	CTACCGCTATCTGTACCTTGGCCACGCTAT	
    115576	    36	 100.0	    30	....................................	GAACTCGAACGAATTCCGTGAGACATACCT	
    115642	    36	 100.0	    30	....................................	ATGAACGATTGAATGAAATTGATGTCACAC	
    115708	    36	 100.0	    30	....................................	CTGCAATTCGTTCATAACGCCACTGCGAGG	
    115774	    36	 100.0	    29	....................................	AGCGAGGTGCTCAGCAAGTAGATAAGGAG 	
    115839	    36	 100.0	    30	....................................	AGTGCCAGAAAAAGAGTACGCTCTCTACAA	
    115905	    36	 100.0	    30	....................................	GCCAGCTGTGCGCGTGGCATCATAATCTAG	
    115971	    36	 100.0	    30	....................................	CGAAGGCATGGCCTTGATTTATCAAAGATT	
    116037	    36	 100.0	    30	....................................	AGGTGTGTAGAAAATTCTGCTGAAATAACT	
    116103	    36	 100.0	    30	....................................	ATAGCATCAAATATAAAAGCACGACCTGAT	
    116169	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
        18	    36	 100.0	    30	GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC	                              	       

# Left flank :   GAAAAACCAGAAGTGAAATCAATTATTGAAAAATTAGCAAATTCTATTACTGAACTAATCTCTTATGAATGTCTAGAGAATGAGCTTGATTTGGAGTATGATGAGATTACGGTTTTGGAGTTGATAAAGGCGTTAGGGGTCAAAATTGAAACTATCAGTGATACGATTTTTGATAAAATTTTTGAGATTTTACAAGTTTATCAATTTTTGAATAAGAAGAGATTTCTTGTCTTTATCAATGTGTTATCTTATTTGACGGTGGATGAAATTCAGAAAACTAGGGAGTATATTGAACTTTCCAATATGGATGTTCTTTTTCTAGAACCGAGAAAAAGAAAAGATTTCCCTCAGTATGTTTTGGATAAAGACTATTTCTTACTATCGGAAAATATGGTAAAATAAATACATACAGTACAAATATTAGAAACTATTCGAAACTGAAGTCTGGCTGAGACGAATGGCGCGATTACGAGATTTTGTGACAAAAAATAGTCTACGAG
# Right flank :  CTGTTAAAAGACAAATTGATAGGGTAGTTAGTTTTAGAGTTGTGTTACTCTAAAAAGTTCTTTTAATTCTTAAAAGCAATGTAGCAAAAATATTTAAGTGTCAAAAAGAAAGGGGATTGTAGATGGATTCAAAATCAATTATTATAACTTCTGGTTATAACAGTAGTAGTGAATATTTTAACTTTAATCATCAAAATAATTACCAAAATAATTGAAAGTAAAAAGTATAGATGAATTTGATTAAGCTTCATTTTTTTAGGATAAAAACTAGTGCACAGACAAGTAATTCTCTACCATAAACTTTCAAAGGTAAAATGATGATTAACAACATCCAATTTTCCTCCAAGATTTCTAACTGACTATTGTCCCACCCTCTTTTCCATGCTATACTATATGTATTCGTTTTACTTCAAAGGAGACAAAGATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAGTTCGTGACGGACGGGATGATTGTTGGGCTGGGAA

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:61.11%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 98% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-2.80,-0.20] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: R [56.7-71.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.87,0.27   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
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