Array 1 550616-551561 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQMV01000003.1 Thermus amyloliquefaciens strain YIM 77409 BS74DRAFT_scf7180000000012_quiver_dupTrim_10634.3_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 550616 29 100.0 32 ............................. CCTAAGCCTCGGCCGACTTCCGGCGATGTTCG 550677 29 96.6 32 ............................T GCTTGCAGGGCGGTGTCCGACCGCATGCCCTC 550738 29 100.0 33 ............................. TGCGATACCTAGAGATGGCGTACTCTACTCGTT 550800 29 100.0 31 ............................. AAGGCGGTCGGGGTCGGCCTCCACCGCCCTA 550860 29 100.0 32 ............................. AGGATGTTCACATCCGAGCCCGTGGTGAGCTC 550921 29 100.0 32 ............................. CTGGCCGAGCAGGCGGTCCTGGCCACGGAGGA 550982 29 100.0 32 ............................. TAGCCATCCTCGGGCTCCCACTGGCCCTTGAA 551043 29 100.0 32 ............................. CGCCCCTTCTGGTCTATGCGGCGGGCAGTGAA 551104 29 100.0 32 ............................. GAGTTGAAGGAGCGCCGAATGGCGTTGATAGT 551165 29 100.0 32 ............................. GCTGGGGGGGCGGGGAAGGGCTCCGGGAGGTG 551226 29 100.0 33 ............................. GGTAAGGGTTAAGACGATGGTAAAGGTCAAGTT 551288 29 100.0 32 ............................. CCTGTGGGCCAGGGGGCCCTTTTAGAAGGCCA 551349 29 100.0 32 ............................. CTCCCCAGGAGCTCAATCTGGTACGGCAGGGC 551410 29 100.0 32 ............................. TACGCGGGGCCCCCGAAAAAGCCCAGTAGCCC 551471 29 100.0 33 ............................. GCTGGCCTTCTCCTGGGGGGGATGGCTGGGGGC 551533 29 93.1 0 ..........................G.A | ========== ====== ====== ====== ============================= ================================= ================== 16 29 99.4 32 GTAGTCCCCACGCACGTGGGGATGGACCG # Left flank : GGGTGCGGGAGGGCTTGCCCACCAAGGAGCAGGTCCTCGAGGCCCTGAAGGTGGTCTATGACCCCGAGATCCCCGTCAACATCGTGGACCTGGGCCTGGTCTATGACGTGGAGATCCACGAAAACGGCGTGGTGGACCTCACCATGACCCTTACAGCCATCGGTTGCCCGGCCCAGGACATGGTGAAGGCCGATGCGGAAATGGCGGTGATGCGCCTTCCCGGGGTACAGGGGGTGAATGTGGAGTTTGTCTGGACCCCTCCCTGGACCCCTGCTCGGATGACCGAGGAGGGCAAGCGCATGATGCGCATGTTCGGGTTCAACGTGTAGGGGGCTGGGTGGGGTAGACTGTGGGCCTCGAGGTGCCAGGGAGCTGGGTGGGTTCGCAAGCCCCTTGTTGACGCACACCCAGCGGGGATCTTGACAGCCAATCCTTAGACGGGTTCCCTTTACATACACATAGAGGGGGGTCAGCGGGGGTTTTTGCCGTGTGGGTCATGT # Right flank : AGGCCAAGGCTCTCGGTTCACGGTTCCCAGGTAACCCAAGGGTATGCTGACCCCGTGCTTAGGGTGCTGGTTAAACCGGGCAAGGAGAGAAAGGTCCGCAACTTCTACCCCAACCTCTACCGGGACGAGCTGGAGGAGATGCCCTCCCAAGCTGGGGTTGCCGAGGCGGTGGCTGCCGATGGGGGCTTTTTAGCGGTGGGTTACCTGGATCCCGATTCCCGCATCCCCTTCCGGGCTTACCGCTTTGACCCCGGCCCCTTGGATCGCGCCTTTTTTCTGGCCCGCTTCCGGCGGGCCTTGCGGAAAAGGGAGGGGTTGGGCCAAAGCTACCGCCTGGTGCACGGGGAGGCGGATGGCCTTCCCGGTCTGGTGGTGGACCGCTTCGGGGAGGTTTTGGTGCTCCAGGTCCGCACCCGGGGGATGGAGGCCTTGAGGGAGGTGTGGCTTCCGGCCCTTCTGGAGGCGGTATCCCCCAAGGGGGTCTACGAGCGGAGCGATGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 935122-935534 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQMV01000003.1 Thermus amyloliquefaciens strain YIM 77409 BS74DRAFT_scf7180000000012_quiver_dupTrim_10634.3_C, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 935122 36 100.0 41 .................................... GTCGGAAGGTCCGCAGGTCGTCCTCAGGGCCAGTCACCACG 935199 36 100.0 40 .................................... TGCTCCCGTAGCCGCCTCAAGCGCTCGCCGATGTTCATAC 935275 36 100.0 41 .................................... ACCGCCGCCCCAACCATCCAAAACGGCTAGGGCATGCTCAA 935352 36 100.0 38 .................................... GCGTAGCACACCGCCCAGAGGGGTGGGCCGTAGACCAA 935426 36 100.0 37 .................................... ATCACTAAAAACCCTGCCTATTACCAGCCGCTGAAGG 935499 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 6 36 100.0 41 GTTGCACGAGATGCTTCCCCGTAAGGGGATTGCGAC # Left flank : CGGGGCGGCGGGTAAGGGGCAGGGGGAGCCTCGAGGCTTTCGCAAGCCTTACGCCGGGCTTTTGGCGGTCCTGGCGGCAAGCTTGGGGGAAGCCCTTGTCGGGAAAAGGCCTTGCGAGTCCTTTCGCCCAAAGTGGTCTATCCCACAGTTATCCCTCCACTTGACGCGCTGCAAAGCCAAAGTATCCACCCCGTAAGTATTGGTACGTGCCTCCAAAACGCTGAAAACCCCATCTGTGTTGAACCCAGTAAAACGGCGCAGAGAGATGCTACAATGGGTATGTCCGGACCACCGGACGGGGATCTTGAAAGGCGGTTTTCCTCTTGGGCAAGGGCAATATGCGCTTTCACCTTTTCATCGGCCCTTTCTCCTGTGGCTTTTCATCGGCCCAAACCCCGCAAAACCCCCGGTATACGCCATGTGCATATTCCAGCCTTCATGATTCTCACAAACCCCCCCTCCGGGAGCCATGTCCAGGACGGTGTTCTTGAGGGGGTACA # Right flank : CCCAGGCCATGGGCCTGGGTTTTGTTTTGTTGAGGTGCTTTAGGTCATGGTTTACGATGCCCTGGGAGATAACCGTTGGGTGAGGCTGGCCCATCTCTTGAGGGGAGCCTCGCCTTCATGTGCTTAAGTCCTCTCCGGATCCACTGGGAAAAGCGGGCAAACGCCTGCTGGTATTGAAGATGTGGGTAAAGCCCAGGTTCTACTAACCGGTTTGCGCATTGCGGTTTGCGTTGGCGATAATCCCCAGGCCAAGGCCAAGCCTCCACCAGTGCTGGGGCCACCCCTTGGGGGCTACGGTAAAAGATCGCGCTTCACTCCCTAGTTGCACGTGGACTTGTAAGGGAACCAGTGCGGCCCGTACCGCCAGAGTGCCTTGGACTTCAGGCTTCAATATTTTCTCCTGTACCAGACGCTCCCCAGCGAATACTTGTACCCGCACGGCACAGCCCGGGGGGTGGGTGCGGACGAAAGCCCCCTGGAGGTCAACCCAGGCATCCAGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACGAGATGCTTCCCCGTAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 3 965000-965715 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQMV01000003.1 Thermus amyloliquefaciens strain YIM 77409 BS74DRAFT_scf7180000000012_quiver_dupTrim_10634.3_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 965000 36 100.0 39 .................................... ACATGTCGTGTAGTATTCGTCGTAGCACGACTCGCACAA 965075 36 100.0 37 .................................... AGTTTTTCCACTTCTGGGGCCGCGGCCTTATCAAGGG 965148 36 100.0 41 .................................... AGTACCTCACGCCGAAAGGCGTCAAGGGTCTATCACCTCCA 965225 36 100.0 38 .................................... AGGTCTTCCTTATCCATAACCCTACCCCCATGCACCCA 965299 36 100.0 43 .................................... TTGAGGGCGTGGTTTGTCGCTTGCGCCCACTTGCGCCCCCCGT 965378 36 100.0 39 .................................... GCGTACACAAACGCCCAGCCGGTATTTGTGGCGCCCCCG 965453 36 100.0 40 .................................... GCCATATAGTAGGCCCATTTTGGGATCACCGCCCCCGAGC 965529 36 100.0 38 .................................... TTTATGCGGTAAATATTAGCCCTCCCAGTCCGCCGCCA 965603 36 100.0 40 .................................... CTGTCCAGCCATGCCCAGATTTCCAGCTCCCTGGCTTTTT 965679 36 97.2 0 ..................................C. | A [965712] ========== ====== ====== ====== ==================================== =========================================== ================== 10 36 99.7 40 GTTGCACGAGATGCTTCCCCGTAAGGGGATTGCGAC # Left flank : GCAGGCAGGTTACCCATCCTCTGGGGTTCCGCAAATCCTATGGGGAGCTCCTACAGGTGCAGGCCGCAAGGCTGAAGGCGGCCATCGTCAAAGGGGAGCCCTACACGCCCTTCTTCCTGAGGGGCTAGGTGGGCAGGGTCCAATGCTATACTTATCTGCGTTTTTGCGCTGCTAAGGATACTGCAAAATGTGAAAGTACGGGGGAGTGTTGTGTGGAGCGATTTCCGCGCCGTTTTTCTTTGACCCAGTCTACCACCGCAGTAAGGTGCTAAAATGGGGGTGTCCGAAGGGCCGGACGGGGATCTTGAAAGCTAGTTTTTCCCTTAGGCAAGGGCAATATGCGTTCTCACCTTTTCATCGGCCCTTTCTCCTGCGGCTTTTCATCGGGCTAAACGCCACAAAACCCCCTTTATTCGCCCCATGCATATTCCAAGTTTCATGTTTCTCACAAACCCCCCCTCTGGGAGCCGCGTCCAGGACGCTGCTCTAGAGGGGGTACA # Right flank : CCAGGCCGTTGGCCTGGGTATTTTGTTTTTATGAAGCGCCTTTATGCGATTGCCTACGATATACCGGACGATAACCGTCGGGTGAAGGTGGCCAATCTCCTCAAGAGTTATGGGGAGCGGGTGCAGCTTTCCGTGTTTGAGTGCTATTTGGACGAAGACCTCCTCAACGATCTCCGGGCCCGGGCCAGAAGGGTTCTGGACCTAACCCAAGATGCCCTGCGCATCTACCCCGTGGGGGGTGAGGTGCACGTCCTGGGCGTGGGGCGGGTTTCGGAGGTGGAGGGGTTTGCGGTGCTCTAGTGCGGGCCAAAGGGTTGCGGCATGGGGGGTTTAGGGCACCCGGGGCCTATAATGTGTCCATGGAGCTATTCCTGGTGCGCCATGCCCTGGCCCTCCCCCCGGAGGGGGAAGGGGAGGAGGCGGACGACCGGCGCCCCTTGGCCCCCAAGGGGGTCCGGTGGTTCCGCAAGGTGGTGCGGGGCCTGGAGAGCCTTGGGGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACGAGATGCTTCCCCGTAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 4 1593754-1593355 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQMV01000003.1 Thermus amyloliquefaciens strain YIM 77409 BS74DRAFT_scf7180000000012_quiver_dupTrim_10634.3_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 1593753 29 100.0 32 ............................. TTCAATCCAAAAAATCTCCTCCCCGTCGCATT 1593692 29 100.0 32 ............................. AGCTGGGCGGGAGATGCAGACTCTGGGGGGAG 1593631 29 100.0 32 ............................. ACCTTGGCGACGGCCCCCAAGTAGGAGGGAAC 1593570 29 100.0 35 ............................. GGAGGTGTCCCGGTTCATCCTGGAGCAGGTGGCCC 1593506 29 100.0 32 ............................. GGCTGGGCGGATGGGGCCCGGACCGCCGCTAA 1593445 29 100.0 33 ............................. TCGGTCCGGGCTTTCCTAGGCCTAGCCCACGGC 1593383 29 79.3 0 ....C......G.A...........T.TA | ========== ====== ====== ====== ============================= =================================== ================== 7 29 97.0 33 GTAGTCCCCACACGCGTGGGGATGGACCG # Left flank : GAGGAGGCCAAGGAGGAAGAAGAAGACCCCACCCGCCCCGGGGGGCTTTGGGACCCGGAAGGGGAGGTGGAGGGGGGCGTGGCCTATGGTGGTGATGGTCCTGGAGAAGGTACCGAGGAGCCTGAGGGGTGAGCTCACCCGCTGGCTTTTGGAGCTGGACACGGGCGTCTTCGTGGGCCGGGTGAGCGCTGTGGTGCGGGAGCTTCTTTGGGAGAAGGTGGTGGAAAAGGCTGGGGATGGTCGTTGCGCCATGGCCTGGCGCACCAACAACGAACAGGGCTTTGCCCTCAGGCTTCACGGCTACCAGGACAGGTCCTTGCGGGACTTTGATGGTATAGTGTTGGTGTCGGTGCGCACCGCTGAAGCTTTGCGCAAGGCTGAAAAGCTAAAGCGCATGACCAAGGTGGCGCACGGGGATTTTGAAAACCAAACCTCGGAATAACTCCCTTTACAGACCCTTAGCGGGGGGTGAGCGAGGGTTTTTGCCGTCTGGGTCATGT # Right flank : ACCAGACCATGGAAAAAAGCACCCCCCTCGTCCTCGAGGGGGGTGCCTTCTGACCTTGGTGCGCCCGGAGGGATTCGAACCCCCGACCTAGGGCTTAGGAAGCCCCCGCTCTATCCTGCTGAGCTACGGGCGCCCACGCCTCTGGGATTTTAGCACCCAGGGAAGGCCCAGGCAAGCGGCCTTGGGGCATATACAGACTTGACCGCTATTCTGCATAGAGCCCCAGGAACCGCAGGGCAGCCAGGGGGTTGAAGGAGAAAACCTCCAAGGCCGCCTTCTTCCGGCGCACCCCCTTCCAGTTCAACCACGAGACCAAGTGCGCCCGCAACACCGCCAGCACCTCACCCCCTCGCCCCCGCACCTGAAAGGCGTCCTCCCGCAAAAGCACATCCCGCACCCAGAAGGAACCATTCTCCACCCCCCATCGCCCCACCCAAATCTCCCCCAGCACCCGGGCGTCCGCCTCCTCCGGCCCCAGGCTCGTGAGCGCGTACCCCTCC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACACGCGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTAGTCCCCACACGCGTGGGGATGGCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 1603493-1604620 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQMV01000003.1 Thermus amyloliquefaciens strain YIM 77409 BS74DRAFT_scf7180000000012_quiver_dupTrim_10634.3_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1603493 29 100.0 32 ............................. TTAGCATATACCCGTTTCCCTTTAGCTAGGGC 1603554 29 100.0 32 ............................. GCATGGCAAGGCTCCTCGGGTACGGGATTGAT 1603615 29 100.0 32 ............................. TCGGCGGGGGGCCCTTGAGTAACACGCCCCCC 1603676 29 100.0 32 ............................. GTGCGCATCGGCAAAACCCCATTCGTGGGCAT 1603737 29 100.0 32 ............................. ATGGGTTCCATGGCCGCCCAGCCTCACACAAC 1603798 29 100.0 32 ............................. GTCAGGGGACGCCGGGACGTTCCCCGTGCTGT 1603859 29 100.0 32 ............................. CGATGAGGCATCCCACAGACGGGACACCTAGC 1603920 29 100.0 33 ............................. GGGGCCAGCGAACGGGGAACCACCCAGACCCCC 1603982 29 100.0 32 ............................. TGATTCCGGCTCCCTGGGCCCGGGAGGGGGCC 1604043 29 100.0 32 ............................. TCGATATATGCAGCACGCCGATCTGGCAGGCC 1604104 29 100.0 31 ............................. GTACCATGAGGCACCTCCACGTCCGCGAAAA 1604164 29 100.0 32 ............................. ATATGGACCCCAGACAACTTTGGCAGGGTAAT 1604225 29 96.6 32 ............................C TCCTGCAGGTACGGGATGCCCCCGAGGTCCAC 1604286 29 100.0 33 ............................. CCCAGGTAACCCCCTATCTCCTCCTCGGCCTTT 1604348 29 100.0 32 ............................. AGTACCTCCTGGCCGCTTAGGGCCATGATGCG 1604409 29 100.0 32 ............................. GGCCACCTGATACCCGCTCCTGGGCCCTGCGG 1604470 29 96.6 32 ............................T AGCGGGGGGCGTGTTACTCATGGGTCCCCCGC 1604531 29 100.0 32 ............................. AGCCTCGGTTCCATGTCTTTATGTGTAAGACC 1604592 29 86.2 0 ...........A.G...........C.T. | ========== ====== ====== ====== ============================= ================================= ================== 19 29 98.9 32 GTAGTCCCCACGCACGTGGGGATGGACCG # Left flank : CGGGCCAGCTTTTCCAGGGCGTTCCCATACTGCCGGGTTGGGGCCTGGTGGTAAAGAAGCCTCCCCGCCGCGAAGAGGGCCAAGGCCTCCACAGGGTGGAGGACAGGCGGGGCGTCCCTCAGGCGGTAGCGCCCCCAGGCCACCCGCTCCACGGGGTAGCCCTGGAGGGCGAGGGCCTCGAGGTCCCGCTCCACCGTGCGGGGGCTCACGCCGTAGCGCCGGGCCAACTCGGCCACGCTATAAGGCCTGAGTTTCAGCTCTTCCACGAGGTCCAAAAGGCGCTCGGCTTTGGGTTTTCCCGCCATCTTGGGTGCATTATAACTTGTGGCGTGGTATCCTTGAAGGCGAGGGCCTACCCCCTTCTTCTCCCCAGCCCTGCTGGCCGAGTTGCCAGAGCGGATCTTGACAATCCGGCCTCGAGTCGCCAGCTTACTTGGAGCCGATCTTTTTAAATACCCTTAGAGGGGGGTAACCGGGGGTTTTTGCCGTCCTGGTCATGT # Right flank : GCGTCTACCTGGCCTTCTGCTGGCCCCGGTGGGCCCCCCAACGGGGCCGGCGGTTCAGCGGACCCGGCCAGAACGAGGGGTGCGGGGCGAGGCTTCAGGCAAAGCCTCCACCCGCTTGGCCCGTTCCAGCTTCACCCCCTGCACCTCGGCCAGACGGGGGAGGTCCTGCGGGCGCAGGTCCACGTAAAAGGCCTCCTCCCCCTGGGCAATCTTGCCCACCTCGAGGCCCCTTTCCTTCAACAAGGCCACCAGCCGGGGCAGGGTGAGCCTCTGCCCCGTGGCCTTGAAGGTGAGCCAGCCCTCCTCCCCGGTGAGGAGGCTCTTTTCCTTGGGGGCCCCGCCCAGGAGAAGGGCCATGAGGGCGGCCACCACCTCCACCCTCCCCTCGGCGAAGAGCTTCCCGGCGAAGTCCAGGTAGAGCTTGTAGTCCCTCTCCGGCACCCGGGCCAGCCGGGCCAGGAGGTGGTGCCATTTGGCCTCCAGGACCTCCTCCGGGGTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //