Array 1 15195-16077 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGHP01000070.1 Escherichia coli strain SI-NP037 sequence070, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 15195 29 100.0 32 ............................. ACATGCAAAAAAAGCGAGAGGCAGCCAACCCC 15256 29 100.0 32 ............................. TGACTGCGGTTCAAAATCTCCGGCACACGTCC 15317 29 100.0 32 ............................. ATACCCCAGCGTTTCGTTATATGACGGAAGAT 15378 29 100.0 32 ............................. GGATTTGCATTAACGCGGCGTGAACATTATTT 15439 29 100.0 32 ............................. GGGATGAAATTGAACTTCCAGGCGACCGACAA 15500 29 100.0 32 ............................. ATTGATAACTCGCGCTCATCCATTTTGAATTA 15561 29 100.0 32 ............................. GTCTGTGATGGTCTGCTCGTGAGTCCGCGGCG 15622 29 100.0 32 ............................. TAAACACAAGAAAAGGGCGGCACGGAGCCGCC 15683 29 100.0 32 ............................. GTAAAAAATATGATTGATTTAAAGCGGGTGCC 15744 29 100.0 32 ............................. CAATTGGCGGAATACAGGACGGGTGGATATTC 15805 29 100.0 32 ............................. CCCCTGTCGCCGTTGGCGGATTCTTTCCTGTA 15866 29 100.0 32 ............................. TCGCTATTGCCGGTAGTGTCGCTGATAGACTC 15927 29 100.0 32 ............................. ACCTCGACAATGACACGGGCGCGAAAACAATC 15988 29 100.0 32 ............................. CTGAAAAAAAGGGACTGGGTAACAGCGCGTGA 16049 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 15 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTAGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGGTTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGAGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1628-257 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGHP01000058.1 Escherichia coli strain SI-NP037 sequence058, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1627 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 1566 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 1505 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 1444 29 100.0 32 ............................. AATTTTTTATCCTCATAAACAGCCTCAGAAAA 1383 29 100.0 32 ............................. AGTTACGTCGCCATCGATATTAACGGAACACC 1322 29 100.0 32 ............................. CCGGAGATCATCATATTCTGATACGTTCCGGT 1261 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 1200 29 100.0 32 ............................. GCAAATTAAGCTGGCTGGCAATCTCTTTCGGG 1139 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 1078 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 1017 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 956 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 895 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 834 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 773 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 712 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 651 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 590 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 529 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 468 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 407 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 346 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 285 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTTAATTAATATCTATTAATTTTTTCTTTAGTTTATTAGTTTGTTTTTTAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //