Array 1 278952-278679 **** Predicted by CRISPRDetect 2.4 *** >NZ_UYIE01000119.1 Lactiplantibacillus mudanjiangensis isolate Lactobacillus mudanjiangensis AMBF197, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 278951 29 100.0 32 ............................. AACCTAAACTAAATTCGCGATAATCAGTGACT 278890 29 100.0 32 ............................. GACGCCGAAGAAAACACGGTCACATCTGGCAG 278829 29 100.0 32 ............................. AAATTGAGAACCAAATAGCATAAAATAGCATT 278768 29 89.7 32 ............T.C.............C CCTCTTAAAGTATGTATGGTCGTGATGAGTGT 278707 29 79.3 0 ..............C......TA..A.TA | ========== ====== ====== ====== ============================= ================================ ================== 5 29 93.8 32 GTATTCCCCACGCATGTAGGGATGATCCT # Left flank : ACCCACATGAGCTAAATATTGTGGCTACGTTTAACTTAATCAATAGTCCCGCTATGATGATTGAACGTGGCATGGGCTATGCGTTCACATTTAGTCATTTAATTAATACGACCGGCAACCCTAATCTTTGTTTTCGACCATTGATGCCAAAGGTGGAAACCAGCCTTTATTTGGTATGGAAAAAGTATCAAGTTATGACACCGGCCAACAATCTTTTTTTGAAGCAATTACGTCATCAATTGACTTTCTAAAATGAGATGACAATCTTAATTGCTTATAGGTAGTAGAGGATAGGTACGAAAAAGTGGGAACTTGCGAAATGCGACCCACAGAATTGATAGTTGGACAACCGGTAAAAATTCATTTGACGGATCTAGGTAATAGATAAAGCTGCATAGGTATCTTATACTAGATACATTAGGACGATTGTTTGAATGCAAAGTGATGTAATTTCGACTTTTTCGAAAAATAGAATGCTGGTATAACGGCGTTTGTTTAGT # Right flank : GAAAGAATTATTGTTCATAACAACCAAGTGCCTACCTTGTGCAAGTACCGTTTCATGAGCGAGGTATTTTTATTGCTGGGTAAGCACATCAGAATCAGGTAAAAAAATTTCGAAAATGCGACGATTGGAGCAGTAACGATGAAGATCACTGGTAATGAAGATTTGCGGGTTCAAAAAACAATCAATGGGATCTACGCAGCGTTTGAAGCGTTAATTTGTGAAAAAGACTATGAACGAATTACGGTGAAAACGCTAACCGATCGCGCTCAAATTAATAAAAAAACGTTTTATCGTTACTATCCAACCTTGGATGATCTATTGGCCGAGTTACAAGCACGGTATTCACAGGATTATTTAAAAACAGTTGGAACGTTTAGCTATCCGCAAGATTTAGGAAAAAGTGTACGAACGTTTATTGAGTACTCTGCGCGGCAAAATGAGGCTTATGAAAAAATCACTTGTAGTGGCACCTATGTGGGCATTCGTCAGCAAATGATTGA # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCATGTAGGGATGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.30,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 281816-281421 **** Predicted by CRISPRDetect 2.4 *** >NZ_UYIE01000119.1 Lactiplantibacillus mudanjiangensis isolate Lactobacillus mudanjiangensis AMBF197, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 281815 29 96.6 32 ............................T CCAAGTCTTTGTGTAGCTAAACAAGTCTTTGT 281754 29 96.6 32 ............................A GTTATACGATACATTTATGAGGAATAACACAG 281693 29 100.0 32 ............................. TGGTCGTCAATGCAGTTATGAGTATAAAGGTT 281632 29 100.0 32 ............................. ATCACCTTTGCCAAAGGCACGCACGCCAGTCA 281571 29 96.6 32 ............................T GGTGTATATTCAGTGTCAATTAACGGTCTGTC 281510 29 100.0 32 ............................. TTCGTAGTTGAAGACTTTGATGTGAATAAAGT 281449 29 79.3 0 .C....................C..GATT | ========== ====== ====== ====== ============================= ================================ ================== 7 29 95.6 32 GTATTCCCCACGCATGTAGGGATGATCCC # Left flank : CATTTTATTCGTCACGGCCGGAGTTTGTTGACAGCTTCAATAATAGTTTAACTGCCGCTACGGTTTCAACTGGCTTGTGGGCCTTGATTGGGTTAGTGTTTGGGTTTGGTGGGTTAATTTTTGATCAGGAACAGTGGAGTATCACCAAACAGACAGTTATTCATTTGCTTGTGACCTATGTGACGTTTACACCACTAGCGATTCTTTGCGGGTGGTTCCCATTGAATTGGGGGTGGATCGGCATATATACGCTGATTTTTATCGCGGTGTATGTTGCGATTTGGAGTAGTGAATTTCAAGCGACCAAACGTGAAATTCGGCGGTTAAATCGGTTATTGAAACACTAGGACAGAAATCGGCAGGGTGATTGCAACTAAGCGTGGATAAAAGCGTATTGGTATTTTATACTAAGGACATCGGGACCAGTTGCTTAAGTGCAAAGTGATGTAAATTCGGGCTTTTGGAAAAATGGAATGCCGGTATGGCGGCGTTTGTTTAGT # Right flank : TATCAGTAATCACTATTGATTTGTTTAAATAAAAGAACATAGGCCATGAGAGTGATCTGTATTCTTTTACAGTCAGATAAAAAACCATCGCTAGTTTGCGATGGTTTTTTAATCGGTTAATTAAACTAGTCCTTTTCACCACTGTATACGGGGAATACACTATCTTTACCATAGTTATTCATTTTGATTGCTTTCAGTGTGACCATATCAGCAGCACTAATATCAAAATCCATTTCTGCGTTATTCTTCATATGTGCAACACTGCTGGCTTTAGGGAGTGGAACCAAGTTTAATTGTAAACAATACTTGATTGCTAGCTGGGGCACGCTGACACGATACTTTTCAGCCATCGCAGTGATTTTTTGTGAGCTCATCATGGCACCATGAGCAACGGGCGAATAAGCTTCGACCAAGATGTTCTTACTTTGCGCATACTCGATTAAGTCAAATGGTGTATTACCAATATGTGCCAATATCTGATTAACCATTGGCATCACTGT # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCATGTAGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.30,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,4.91 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 3 293151-293000 **** Predicted by CRISPRDetect 2.4 *** >NZ_UYIE01000119.1 Lactiplantibacillus mudanjiangensis isolate Lactobacillus mudanjiangensis AMBF197, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 293150 29 100.0 32 ............................. GTCTAAAAATGAATAGGAGGCACGCTCATGAG 293089 29 93.1 32 ........A...................T AATCACCTCCTCAGGTGCGAAAAATTAATTAT 293028 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 97.7 32 GTATTCCCCACGCATGTAGGGATGATCCC # Left flank : TTTCAACTCGGTTTTGTCCAGGCTTTGCTCGGGGTTGGTTACACGTTGACCTTGAACCTACACCAATTGCCACAAATTAATTGGTTAGCCGCAGCGGGGCCAGTAGTGTATTTAGGCGTTGTTGCGACGTTTGCGGCACAGGTGTTGCAGATGATCAGTCAACGCTATACGGATACAGTGACGGCGGGGCTGATTTTGATAACGGAATCCCTGTTTGCCAGTTTGATTTCAGTCTTATTTCAAGTTGAGAGGCCAACATTGCATTTGGTCATTGGTGGCAGTTTAGTGATTTTGGCGACGGTTATTACGCAGTTTGATTTGCGTGGCGTCTTTGCACGATATTTAGTCAAGGGACACCGATTTAAAGCGTAGGGTGTACTGGAAAATATGGTATGCTACTTTTAGGATAAATTGTTGAGCGTTGAATGAACTGAGTTTAAAGTGATGTAAATTGGGCTTTTCCGAAAATTAAAATGCCGGTGTAGCGGCGTTTGTTTAGT # Right flank : ATAATTGAATACTTTCTTTCGTTATACATTAATAGCGTATATAAAAAAGACCGGAATTTCGGTCTTCTTTAGTATCTGTGATTTTCCAAGTAGCGTCTGTGCAAGATTTAAATACATACACTTAGTCCTTAATCGGGTAGTAGGCATATTGAGTTGTTTTTATTCATTATTGTAGCTGACTGTCGAGTTTCAACAAGTTATATATTTAATATACTATGCTAAAACTGTATCGTTGTTGGGATCATTGGTTACTAATTCATTAACATTGGTTATCAGTGTATCCAGCTTATCCAAGTCGTCGTCACATGTTCTACCTAAAAAGTCTGAGCCAAGATCCATACACTGTTTGTCAAAGCTTGTCATGGTTATAGTGTAAGTGATCAGGCATATCTATTAAGACATCCCCTAGGCCGGTTTACCATTTGAGTCAGCGTCTGTAAATTTAACAACTATGTTGTATGGAGCATTGCTGCTGCGGTCTCTAATGACATGGGCTAAGT # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCATGTAGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.30,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.42,4.5 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 69945-69671 **** Predicted by CRISPRDetect 2.4 *** >NZ_UYIE01000141.1 Lactiplantibacillus mudanjiangensis isolate Lactobacillus mudanjiangensis AMBF197, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 69944 29 100.0 32 ............................. TAGAACACTGGCTCAGATGCTTGAGGGACGCG 69883 29 96.6 32 ............................C TAGTACGCATGATGATTTTACCGGCTCTCTGA 69822 29 96.6 33 ............................C AAGCTGAGCAACCCAACGATAGTAATGATGACA 69760 29 100.0 32 ............................. CATATTCGTGAGAATACTTCCAATAATGATAT 69699 29 79.3 0 .......T...A..C.........T.TT. | ========== ====== ====== ====== ============================= ================================= ================== 5 29 94.5 32 GTATTCCCCACGCATGTAGGGATGATCCT # Left flank : AGTTTATTGATCAACCACAGCCAGAATTGTTTTATTTTATTGTTTTTCTATTGTGGGCGTTAGCTTATGCTGTTTTATCATATGCATTGGTCAAGGACAATGAGCAGGAAGGGCATGCTGATGTTGCAGCTAAGATTCGGCGAATGCCAGTTTATCGGGTGCACACTCATTGGTGGTTCTGGGCATCAAGTGTAGTGGTTGCCGCTTTGATCTTGTTTGTTTGGCCGCCATTATCCTTGATTTTTACGGTGGTTGAATTGGTCGTGATGGCGATTAAAACGACACCAGATAGTGATCGTTTGATGTAGGTGTGGTTGCGTTAAATAGTTGATGGCTTGGCTAGTAATGGAACTTTGACAATTAATTGGTACGACGTATAGAAAAATAATGCTTAGAAATTTATACTAAAAGTGAGTTAATATTAACTAGTCTATTTACAAAGTGATGTAAAACTGTGGCTTTGAAAAAACACAATGCCGTTATGGCGGCGTTTGTTTAGT # Right flank : TCATAATAAATTAAAGTTAAAAGAATCATTGAGATTAGAATTTGTGATGGACATTATCTAGCCGGACTACAGCATTAATTTAATATAGGAGGTCGTAAGATGGCTTCATTAGATGATTTAAAAAAAGTGACAATTGGGCCAATTGAAACGAACCCACAAGTTAAATTGGTGGGCTACTGTTCGCAGTGGAAAACTGATTTTCAACAAGAGCAGACAAAAATTAAGGATGCACTAGGGGCAACTGCTTTGAATATTGAGCATGTGGGTTCTACTTCGGTACCAGGACTCACTGCAAAGCCCATCATTGATATTTTACTGATAGTACCAGATTCGGCAGATGAGGTGGCTTATGTGACCAAGTTAGTTGCGGCTGGTTATGTACTGCGAATTCGTGAGCCAGATTGGTATCAACATCGAATGTTTTATGGTCCCGAACATAATTTACATTTGCATGTTTTTAGTCAAGGGTGTCTAGAAGCACAACGAATGTTAAATTTTCG # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCATGTAGGGATGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.30,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,4.91 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 2 71591-71318 **** Predicted by CRISPRDetect 2.4 *** >NZ_UYIE01000141.1 Lactiplantibacillus mudanjiangensis isolate Lactobacillus mudanjiangensis AMBF197, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 71590 28 100.0 33 ............................ CAATCAGTACGCCATAACATGCCTTACCGTTTA 71529 28 100.0 34 ............................ TAACAGTCAATTAAATTGAACGTACAACGCTTAG 71467 28 100.0 34 ............................ CATGAGCGCTGCTATGATCTTAGTCAGCATGTTA 71405 28 96.4 33 .............G.............. TATGAATCAGGCGGAATCGCCTTCAAAATTTGC 71344 27 78.6 0 A...........T........-..G.TT | ========== ====== ====== ====== ============================ ================================== ================== 5 28 95.0 34 GTATTCCCCACACACGTAGGGATGATCC # Left flank : TATTTCAAATCACGTGGCTGGATAGCTTAGCAAGTATAGTAATCGGGTTCTTCATTTTTGCGGCCGGACTACAGATTTTTAAAGATAGCGGACTACAACTCATTAATTACAGTGACCCACGAGTTGAAAAAGATTACATTAAAACGATTCAACAAATTTCAGGAGTTGACCAGGTAAATGCGATTGATGTTCAGTATTCGGGCAATCTCGTCACACTGTCGCTAGTCATTGGTGTAGCGCCGCAAATGACGGTAGCGGAAAGCTTTCAACTGAATGAAGATATCGAGAGTGTTATGAAGATTCAATATGGCGTGATTGATACGAAGGTCATGTTTGTGCCAGCGATTGAAGTTATGGATTGACTTAACTGAAAGCGGTATGAAACCAGCTTATTATGGAGATTTTATATTGCGGCCGGATATTGTCTTAGCTTATTGCAAAGTGATGTAAAATGCAGGTTTTGTAAAAATGAAAGGCTATTATAGCGGCGTTTGTTTAGT # Right flank : ACAATAATGGTGTAAAAAACTAATAGTTGTAGTGTTTAAAAGCTTAGTCTTAATGGGCTAGGCTTTTTTATTGTCGTAAATTAATGCTTTTGGGAAAAGAAAGCTTATAATTAATTTGGACTTAACAAATTTTTATTGGAAATTGGAGCTTTTTATGAGTATACAAATGAGTTTTCATCACATCGGTCATCCGGTCGCATTAGATCAAATCAAGGACAATCCGGAAACAAAATACAGTCCTTTATTTGATATGTATTCATTGGATCAACAAAATTCGTTGGGAATTCCAATTGAATTACATGCGTTTGGCCCTAACAGTTCACTGGACCCTTTAATTCAACAAACGCCACATGTTGCGTTTAAAACGTCTGACATTGATGCGGCTTTAAAGGATGCTAAAATCTTAATGCCAAAATATATCCCTTTCAAAGGTTATATTTGTGCAATGATTTTGCTAAATGAGCAACCGATAGAGTTAATTGAAACAACATTATCGGAAC # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACACACGTAGGGATGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.30,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 3 73406-73012 **** Predicted by CRISPRDetect 2.4 *** >NZ_UYIE01000141.1 Lactiplantibacillus mudanjiangensis isolate Lactobacillus mudanjiangensis AMBF197, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 73405 28 96.4 33 ...........A................ TTATAGCACAGTCAACAGTTTAAGGGGTGGCGA 73344 28 96.4 33 ...........A................ CGAGGCGGCCGCTAAAACAAATTCAGCAAATGA 73283 28 100.0 33 ............................ TGGCGGTTTCGCATTCGATCATCAAATGATTAT 73222 28 96.4 33 ............T............... CTACTGAAAGCTGGCCGGCGGGAACATCGCCAC 73161 28 96.4 33 ..............T............. TATTTCCGACTATGTCACTGACGGTAAAAAGTT 73100 28 100.0 33 ............................ CAAACCAGAACCAGCAGTGGTTCAAGAGTCACC 73039 28 92.9 0 ..........G.G............... | ========== ====== ====== ====== ============================ ================================= ================== 7 28 96.9 33 GTATTCCCCACGCACGTAGGGATGATCC # Left flank : CTGGGCAACAGGCACGGACATTGGCTTATATTGAACAGCATCCAGGTGCGATTCAGCGTGAACTAGCTGAGGCGTTTAAGCGTCGTGGGGCGAGCATGTCAAATATGCTGAAAATTTTAGAGCGTGATGGTTACATTGAACGGCGACGTTCAGCGGATAATGATCGTGTTAAGGTACTGTATCTTACCGAGCTCGGTCATCAAACGGTTGCGGCAGTGACCAGTGTATTGAAGGCTTCGGAAAATAAGCTAGTAGAGAATTTGAGTCAACAAGATATTGATGAGCTAATGACTCAATTGAAAAAAATTAAGTTTTACTGATGACTAGATCAGTTCATTTTTGAGCTGATCTTTTTTGCGGATTAAATTTATTGGTGCAAAGGGTATAGTAATTTTCGTAGAAGTCTTATACTGGAATAGAGATTAAGCAGTCAACTGCAAAGTGATGTAAAACCGAGGTTTTGAGAAAATAGAATGCTGTTGTGGCGGCGCTTGTTTAGT # Right flank : TATACTGAGTATTGTTTCGTTGTACCCGATTTAGTATTTCCTATGCATATAGGGCGGTTAATATTAATTGTATTTTTCACAATTCTTTTACAGATAATTGGAACTGCTAAAAGGGCGTACATGTGAAACGAGCTCTAAAACATGTACACCTTTTTTCTTGTTACATGTACATAAAATTAGTGTAAACCGTATCAACAAAGGAAAAACATGTACATGTTCAATGAGACTGGTCAAGTTGACTTCTATAATTGAAGTGTTAAAGTTAGCGATTGAAGTCTAGTAACAAGGAGGAACTTACAATCAAGCAAGCAGATTATCAACGGCCAGTATCGGATGATTGGCAGGCGGTCGAAGCTGATCAAATTCAACGAATGAAGGGTGCACTGTGGCATTTATTGGGTAATGCTGTCGCGTATCTTAGTTTATTTATTATTGAATTTGTACTGGCATCAATCGGTCATTCACAATCATTGCACGCGGATGCCTTTAATAATTTTTCC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCACGTAGGGATGATCC # Alternate repeat : GTATTCCCCACACACGTAGGGATGATCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGCAAGTGGGGGTGATCC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.30,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //