Array 1 9829-10586 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZDU01000052.1 Lactobacillus equicursoris DSM 19284 = JCM 14600 = CIP 110162 strain DSM 19284 Scaffold52, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9829 29 96.6 32 ............................C AGTCGCCTTGATTGACAACTTTTTGATGTCTT 9890 29 100.0 32 ............................. AGCCGTTAGCGGTATAGGTGGTACAACCGCCA 9951 29 100.0 32 ............................. GATGAACGCCTTTCCGTCAATAACAAGGCTTA 10012 29 100.0 32 ............................. GATGAACGCCTTTCCGTCAATAACAAGGCTTA 10073 29 100.0 32 ............................. GATGTGTGTGTTTGGAATGCTGTGTGTGCTTG 10134 29 100.0 32 ............................. GCTGTGTGTGTTTGGAATGCTGTGTGTGCTTG 10195 29 100.0 32 ............................. GATAGTACTGGGCGGCCGTTTGATCAAACGGA 10256 29 100.0 32 ............................. GCTGTGTGTGTTTGGAATGCTGTGTGTGCTTG 10317 29 100.0 32 ............................. TATTGCATCCACAATCTGCTCATATTCGTTGC 10378 29 100.0 32 ............................. TAACGACTATACAGAGATTAATTTTGTGATCA 10439 29 100.0 32 ............................. CACCGAACGCCCTGCAAATAACCGGCTCTCAA 10500 29 100.0 32 ............................. TTTTTGGCATTCGTTTTCATTTTGTAGTTAGT 10561 26 89.7 0 ..........................--- | ========== ====== ====== ====== ============================= ================================ ================== 13 29 98.9 32 GTATTCCCCTCGTATGAGGGGGTGATCCT # Left flank : GGTCTGGATTCTGAAAAGGATAGAATTTTGTCAGTTGGTGCCGTACGCAATGATAGGGCAGAGTTTTATCGGGTGATTAAGCAGGATGTCCAGATTAGCAAAGATATTGTAGATTTAACCGGTTTAACCCATGATATCGTGATGAAAGATGGGGTAGACGAAGTAGAAGCGATAAAGGAACTTAAGGAATTTGTCGGGGATGCTGTGCTTGTAGGCTATAACTTCAAGTTTGATTTGAGCTTTTTAAATCAGGCTTGTCGTTTACATGGCATTGATATAATTTCCAATCGTACTCGAGACCTAATGACAGTGGTAAAAAATAAGGTGGTTGAGCTAGACAGTTATAAGCTCAAAAGTGTACTATTGTACTACGGGATCAAAAATGACCGGCCACACAACGCGGTATCTGATGCAAAGGCGGAGATGGATTTGACGAAGAAACTCATTGAAAATTATGTTTTGAAACTATGAGAATGGCGTCAAATAAGGGATCTTTTAGT # Right flank : | # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCTCGTATGAGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-11.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2187-1609 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZDU01000091.1 Lactobacillus equicursoris DSM 19284 = JCM 14600 = CIP 110162 strain DSM 19284 Scaffold91, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2186 28 96.6 32 -............................ GATAGTACTGGGCGGCCGTTTGATCAAACGGA 2126 29 100.0 32 ............................. TTAAGCTTAAATTTAGTCAAATAATAATTAAA 2065 29 96.6 32 ............................C TTATAACGATAAGATTAGTGCTTATGAGTATA 2004 29 100.0 32 ............................. CGACTTTTCCGACTACTGATTGTGAAGATATG 1943 29 100.0 32 ............................. GAAATTTTCGATGTTTTAAGCAACGACATTAA 1882 29 100.0 32 ............................. GCCGTTTGTGCTTGTCCATCATAACCACAGGC 1821 29 100.0 32 ............................. TATCGAACGCTTCGAACAAGAAGAAGCAGCCG 1760 29 100.0 32 ............................. CGGTTTAGCACGATTCCTTAAATCTCAAGATC 1699 29 82.8 33 .........G.AA.C.T............ GGAGGATATGCATCTAAATCGCCACGCAATATA 1637 29 82.8 0 .......T.A.A....T.A.......... | ========== ====== ====== ====== ============================= ================================= ================== 10 29 95.9 32 GTATTCCCCTCGTATGAGGGGGTGATCCT # Left flank : | # Right flank : CATTGCTCACATTGGGGATGTCGTAGTACCCCCCGATTTCCTCACACTAGTGAGGGCACCAAAAAAGCTTACCCCCTCAAGGGCAATGTCATTAAGTTAAGGCATTGATTTTGAGCGGGGAACCGCTTTGAGACACTCATCTAAGTTGAAGTGCCATAGAAAAGTTAGACATTTTAGAAAATCTTAAATAGTTGCCATTACACGATCTCTGTATTTTACAGGGGTCGTGTAATTTAGTTTATTGGACCGTCTGATGTTGTTAAACCAATATATGTAATCTTTAAGTTCTTGTTGGACTTCCTCCAAAGAATACAGTCTAACTCGATTTAGTCTCTCGCGTTTCATCAAGTTGAATATAGTTTCACCCGGTGCGTTATCGTGACAGTTTCCCTTTCTGGACATGCTTTGAACTAGTTCCATCTCTTCCAAGCGGGCTTGGTAGGTTGGACTTTGGTACTGAGAACCTTGATCAGAATGGATAACTGGGTGGGAGTAAGCCG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCTCGTATGAGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.00,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //