Array 1 55191-54152 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXHE01000012.1 Azospirillum brasilense strain SR80 NODE_12_length_105529_cov_23.3428, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ============================================ ================== 55190 32 100.0 36 ................................ CGCATGCCGGGCGCCAACGCCACCGCGATCCATGCC 55122 32 100.0 34 ................................ TGCAAACACCGCGTCGCCCTGCTGGACGGTGACG 55056 32 100.0 35 ................................ GTCCTGAACCCCGGAGCCTTCGTCCTGGCCGTCAC 54989 32 100.0 35 ................................ CCCGACGTGAAGGGGATGTGGGTTCTCGACGGCGG 54922 32 100.0 34 ................................ CGCCAGATCGAGACAGCCGTCGGCGGCGCCGCCG 54856 32 100.0 34 ................................ TGCATCCCGGCAGCGGACGTGTTGATTCCGGCGG 54790 32 100.0 34 ................................ GCGGTGTGGGGCCAACGAGCAGCGTGTCTGGGTG 54724 32 100.0 35 ................................ ACGAAGAGGGCCGACTACAACGCTGAGCAAGCCGA 54657 32 100.0 35 ................................ ACGTTGAAGGCGCCGGGGCCGGCACCGACGATGAC 54590 32 100.0 34 ................................ TCCGCAGCGGCGCCGCCGATAATTGGCGCAACAT 54524 32 100.0 33 ................................ TGGTTTTTCGCGGGGTCGAGCCAAGCGCCACCG 54459 32 100.0 36 ................................ CAGGCTGGACATCACCCACGCCCGCATCGTCTGCGT 54391 32 100.0 34 ................................ ATCGGGACCGAGCTGCACCCGACCTACTTCGGGC 54325 32 100.0 44 ................................ GACTCCCTGATCGAAGGGCCGACGATTGGCAGTCAGTACGTTGA 54249 32 100.0 34 ................................ TGGTACGGCGTGGTGGCCGTCTCGGGCTGCGGCT 54183 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ============================================ ================== 16 32 100.0 35 GTCGCCCTCCGTGCGAGGGCGTGGATTGAAAC # Left flank : CTGGATGGCTACCCGCCTTTTCTATGGAAGTGAATCCCCATGCTGATGCTCATCACCTACGATGTGAACACCCAGGATGCACCCGGGCGCCGCCGGCTGCGCCGGGTTGCCAGAGCCTGTCAGGATTTTGGGCAAAGGGTTCAGTTCTCGGTTTTCGAATGCGACGTCGACCCGGCACAATGGGCCGTTCTGCGTGCCCGTTTGATCGGAGAAATCAATCAAGAGACGGATAGTCTCCGCTTCTATCATCTCGGAGCCAACGCGGCCCGCCGCATCGAGCATGTGGGCGCCAAACCGGTGCTGGATCTCGGTGGCGCATTGATCTTTTGATCGGTGCGAACCGGAAGCGGACACGAAACCCCCGAGGGGTTCGCACGTCATTCTCATCAATGACTTGTGCGGCTCCGACACCGGAATGACTGCTTCTGCGGCCGCTTTCGAAGTAGGTTCGCATCCGTCGGGGGATTGTGGGTTCTTGAACAAGTGCATAAAGATGAGGA # Right flank : CACACGCTCGAGGAAGCCGGGCTGATCGGAACGCGTCGCCCTTCGTGCGAGGGCTGCTTCCTCAAGCCGAATCGCTCCTGTTGTGAAAATCGGTTCATGACGGCTCGGGGAAATTCAGCGTTCCCAGGGCATCGGCAGGTTCAGTCTATCTGTAACTTGATACGGGTGTATTGAGTCATGGTTGGGCTAAACCTGTTGATGTTTTAAATAGGTTAAGGTGGGCCGACTTTTGACGGTCCTGTTTCCATAATAAATCTTAAGACAAATGGACCGTCACTGCTCAATTATTATCACTGCTTCGGGTGAAGGCTCACGATGCGCTGCGGCGGTTTGGTTCTGCCCGGTTTAGGTGTGGGCGGGGCGCCATCCGTCTGCTAAGGAAGAGGGCGCGGCCGCCAGCCGCGGGTGACGAGAATGCGAGGGGCGGGAAGCGCGTGTTCGTTGATAGCTTTATGAATGACCGATGCCTCTCATGCGCTGATGTCCGGTCCGTCCATGGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCTCCGTGCGAGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.20,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : NA // Array 2 64017-64383 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXHE01000012.1 Azospirillum brasilense strain SR80 NODE_12_length_105529_cov_23.3428, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 64017 32 100.0 34 ................................ TTCAGTGCGCGGTCCATGCCGGTGCTGGTGCCTC 64083 32 100.0 36 ................................ GACCAGGAGCGAAACCCATCGAGGTCCCAGGCCCAG 64151 32 100.0 35 ................................ TCGACGACCTCGATGGCCGGTTTGAAGCCGTCCTC 64218 32 100.0 35 ................................ TTGTTCCACCATTCCCTGATCCCGGCGATATCATC 64285 32 100.0 35 ................................ CGTCCGCGTCCGCTTGGTCAGAGCGGGCGCGGCGG 64352 32 96.9 0 ....................C........... | ========== ====== ====== ====== ================================ ==================================== ================== 6 32 99.5 35 GTCGCCCTCCGTGCGAGGGCGTGGATTGAAAC # Left flank : TCGTGCGCCAAGGTCCGCTTGCCTCGGCCGGAGCGGCAGTCGAGGCATGGCCTCCTCCCAACGGAATGGACAGCGGTTCGGGCGGTCGTTCGCTCGGCCCGTTAAGGACGTTTGTTCGGGAGAGGGGTGCGGTTGAGTGTCGGAAGAGGATAAGGATCGTCGTAATCGTCAAGGCTGAGGAACGGGTTCCGCTTGCCCCATCTGGGAGCACATGGCGCCCGCCGATGAGCAAACGGTGGGTGGAACACTGATCGGTGTCGAGGCGGCCTGCCGTATCGAGCACAGGGTGTCAAACCGGTGCTGGATTTCGGCGACGCGTTGGTTTTTAAATCGGTGCGAACCGGAAGCGGACATGAAACCCCCGAGGGGTTCGCACATCATTCTCATCAATGATTTGTGCGGTTCCGACATCGAGATGGCCGCTTCTCGATTCGCTCCCGATGGAGGTTCGCGCCCGTTGGGGGATTATGGGTTGTTGAACAAGTGCATAAAGATGAGGA # Right flank : CAGATTATTACTATTTCGAATGCTTTGAATCGGGCCATCTTTATCATAGAACCCAAGTCACGCTAGTTCGGATGGACCCTGATTTCTCAGAACATCAACAAAGACTGCCCAAGCGTGACCCGACATAAGCGGCTTCGTCACTGGGAGATGGCCCTGACGGCGAAGTCTTGAAGGAGCAGCACCATGGGGCCGATCCCGCAGCCCCGATCGATTGTCCTGCCCTCGCGCCGGTTCTATTCATAAACGGCGTTTCTGACATCGGTCGGAAACGCCCCAGCCATGCCTTCGAACGCGGTGTTTGTCAGGGCAACCACCGAGAGGCCGTTCTTGCGGTCGATGAACCAGGAATGGCCGTAGGCACCGCCCCATTGCAGCGTGCCAGCGGCCTGCGGTGTGCCCGTCAATGCCGGATCGTCCAGCACCGCCCAGCCATAGCCGAAGCCCCAACCCGGCCCCTGCGTTTGCGCCGTCGCGCCGACCTGATCATGGACCATCAGCCC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCTCCGTGCGAGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : NA //